PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000242G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 562aa    MW: 60003.7 Da    PI: 6.8218
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000242G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30363421259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  PH01000242G0250 363 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 421
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33347423IPR003657WRKY domain
SuperFamilySSF1182909.29E-28355423IPR003657WRKY domain
PROSITE profilePS5081129.976357423IPR003657WRKY domain
SMARTSM007749.7E-37362422IPR003657WRKY domain
PfamPF031069.6E-27364421IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MESYVGAGAG LKRNNVVVGA AVGADGRELP SPPSEFPAVV GLGCGFGKDG GQERLVVVGE  60
MDFFKTEMRK EKRERKEAAA DHAGVAPDDL SIKKGDLTIN VGELVEGAWL SADSLMGLHI  120
GRRNSGSEES TVDDGVSSNE EDHREAKAED PITNFLLIYQ LAVTKSELGR LNEENKRLKN  180
MLSSVTTKYN SLHTHLVTLM QQRDHRGLGT PTIHELIDPE KKDQDQGSLL PRQFISLGSA  240
PLPDEPSHSV GISDCAPSPS NPDASVPTMD YCPGKSNVNG TMISSKDIMP LPVFDHHHHH  300
HIHERDQSPG THQQQQHLPQ SWLLNKVPKF LPTKGPEPVP EAAATMRKAR VSVRARSEAP  360
MISDGCQWRK YGQKMAKGNP CPRAYYRCTM AAGCPVRKQV QRCAEDRTVL ITTYEGNHNH  420
PLPPAAMAMA STTSAAASML LSGSMPSADG SLMAGSNFLA RAVLPCSSSV ATISASAPFP  480
TVTLDLTQTA PGTSASTQPP CPKPAQLQAA LAEAARPVSL PQLFGQKLYD QSKLSAVQAL  540
AGTKEADGGA LADTQQQSSL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-22353423877Probable WRKY transcription factor 4
2lex_A5e-22353423877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000242G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-173AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149611e-173AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807048.10.0WRKY transcription factor 42-like isoform X1
TrEMBLA0A0E0L5U90.0A0A0E0L5U9_ORYPU; Uncharacterized protein
STRINGOPUNC05G23690.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.19e-87WRKY family protein