PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000242G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 87aa    MW: 9646.8 Da    PI: 8.4397
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000242G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-081560345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +W++ E + + da + +G g   +W+++++ mg  +++ +++ ++ 
  PH01000242G0360 15 AWSPKENKMFEDALAYYGEGtpnRWDKVSSFMGGSKSADEVRCHYE 60
                     7********************************99*******9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-51265IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-121571IPR009057Homeodomain-like
CDDcd001673.29E-51563No hitNo description
PfamPF002493.5E-71560IPR001005SANT/Myb domain
PROSITE profilePS500906.7021663IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSGSRSSSP NSIPAWSPKE NKMFEDALAY YGEGTPNRWD KVSSFMGGSK SADEVRCHYE  60
VLVADVKMIE SGRVPYPKYK TQGFWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-2016831177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000242G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303052.18e-40protein RADIALIS-like 3
SwissprotQ6NNN03e-22RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A1E5W9U01e-38A0A1E5W9U0_9POAL; Uncharacterized protein
STRINGSb09g028790.13e-39(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-22RAD-like 1