PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000242G0460
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 216aa    MW: 22581.5 Da    PI: 7.9276
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000242G0460genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.72.1e-2094128135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  PH01000242G0460  94 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 128
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.29988124IPR000679Zinc finger, GATA-type
SMARTSM004016.9E-1988140IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-1491130No hitNo description
Gene3DG3DSA:3.30.50.102.3E-1792128IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.08E-1493125No hitNo description
PfamPF003204.6E-1894128IPR000679Zinc finger, GATA-type
PROSITE patternPS00344094119IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MLQELAPCTC GLLYGSCGGG CGGAAAAFSL LFPMASGQYY YRQCGAEEED GPVDCTLSLG  60
TPSTRRAVPS ALAGGKQEGA VASCKEAALP ARRCANCDTT STPLWRNGPR GPKSLCNACG  120
IRYKKEERRA AAAVAPPPPQ DSGVGYAYGY GRQQQPPTQW GCYGPAGAAK SASFAMFGDV  180
DTAEVDGTCL SWRLNMMPSS PAFAVRERPS LFQYY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000242G0460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638692.26e-74GATA transcription factor 19
TrEMBLB9FLN69e-76B9FLN6_ORYSJ; Uncharacterized protein
STRINGORUFI05G28050.12e-73(Oryza rufipogon)
STRINGOS05T0567900-002e-73(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.13e-27GATA transcription factor 19