PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000246G0410

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Protein Properties

Length: 172aa MW: 19008.8 Da PI: 5.2783

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000246G0410	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.7	4.3e-13	49	130	1	87
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 f v+++ v k +l++p +f h ++k++ t t+ +g+sW+v+++ + k ++ + W +F+ +n+L++gD +vF+l+ g+ PH01000246G0410 49 FTIVMSRTQVQKPFMLCVPARFH--HHLPKAR--TATVLLCRGKSWTVNYCGELKLKK--FDMAWMDFAVDNRLRVGDACVFELMmGT 130 6678899999999*******6..6677666..78888899****65555555..5666*****************87343 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.8E-19	44	149	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-15	44	149	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.91E-18	47	149	No hit	No description
PROSITE profile	PS50863	11.307	49	151	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-10	49	130	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0017	49	151	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
METPGCPSKQ LPADVYIKPK QEPCEDSPPA ASDAAEGWET THLSGNPFFT IVMSRTQVQK 60 PFMLCVPARF HHHLPKARTA TVLLCRGKSW TVNYCGELKL KKFDMAWMDF AVDNRLRVGD 120 ACVFELMMGT GSESNNKEEG MTFQVQILRG DLPEEVTSKG ATSDEPIVIV D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000246G0410

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175391.1	4e-69	B3 domain-containing protein Os06g0112300-like
Swissprot	Q9LHY9	5e-47	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	A0A0A9CYZ3	2e-71	A0A0A9CYZ3_ARUDO; Uncharacterized protein
STRING	EMT13166	2e-68	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	7e-09	related to vernalization1 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]