PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000246G1150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 452aa    MW: 49777.3 Da    PI: 7.8077
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000246G1150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.5e-082863231954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+  ++  LA+++gL+  qV++WF N R +
  PH01000246G1150 286 FEHflHPYPNDVDKHILARQTGLSRGQVSNWFINARVR 323
                      664459******************************88 PP
2BELL106.22.1e-34146214472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      el+++ka+Lls++eeVd+rY++y+eq+++v  sFeavag g+a++Yt+lAl+a+SrhFrcL+da++eqi
  PH01000246G1150 146 ELERRKARLLSMVEEVDRRYRRYREQMRAVELSFEAVAGAGAAQVYTKLALRAMSRHFRCLRDALVEQI 214
                      899*****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-5578212IPR006563POX domain
PfamPF075261.1E-4284210IPR006563POX domain
PROSITE profilePS5007111.434264327IPR001356Homeobox domain
SMARTSM003894.4E-8267331IPR001356Homeobox domain
CDDcd000867.14E-11267328No hitNo description
SuperFamilySSF466898.13E-17268334IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-27270333IPR009057Homeodomain-like
PfamPF059209.8E-17284323IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAMEAPPPFG HGLLALHDAV TDMRGGGGVP HRFLADTTSS WPQVSLSLYN TEGGSLVGHH  60
QQPFTAPPSV AHNLPSTTME PFQLRSSKYL GPVKELLGEF CGLEWDLHAM NSTKRAPKAG  120
KWDDVEASSS SSPLDNPSLS SMDLLELERR KARLLSMVEE VDRRYRRYRE QMRAVELSFE  180
AVAGAGAAQV YTKLALRAMS RHFRCLRDAL VEQIRALRKA MGERDGGGVA AAPGATKGDT  240
PRLKVLDRCL RQQRAFQQSG AVESYPWRPQ RGLPERAVAI LRAWLFEHFL HPYPNDVDKH  300
ILARQTGLSR GQVSNWFINA RVRLWKPMIE DMYTEETKQS DGNQNPRGGG GKPGEKNLTA  360
STATLGESHL RTGNPNSMIP SIVTDGDGHF HSYPSLDVGG GAVSLTLGLQ QQPFASSMMQ  420
QQSFMLEGQE EDAVLPYRNL MGSQLLHDLA E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-15273330158Homeobox protein Meis1
4xrs_B1e-15273330158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000246G1150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188950.0AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964302.10.0homeobox protein BEL1 homolog
RefseqXP_004964303.10.0homeobox protein BEL1 homolog
SwissprotQ388971e-102BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A0A9N9I20.0A0A0A9N9I2_ARUDO; Uncharacterized protein
STRINGSi006303m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-86TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]