PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000254G0530
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 439aa    MW: 47101.7 Da    PI: 6.2326
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000254G0530genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.32.2e-85703811326
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+lL++cA a+++gd + a   La  + + ++ +  + + R+ ++f+ AL++rl+        a+p s+ ++   +e+   ++ f+e+ P+lk
  PH01000254G0530  70 LVHLLVTCAGAIQAGDYASAAGNLADARAIlSTISTaTGIGRVGKHFAAALSQRLFP-------AFPHSAPPPPPPAEQGELYHHFYEAGPYLK 156
                      68***************************95333334899****************9.......33333333334578889999********** PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+h+taNqaIlea+eg+++vH++Df ++qGlQWpaL+qaLa Rp+gpp              ++el+e+g rLa++A++++vpf f+ +++++l
  PH01000254G0530 157 FAHFTANQAILEAFEGCTHVHVVDFALMQGLQWPALIQALAIRPGGPP--------------RDELREVGLRLAELARSVNVPFFFRGVTSDQL 236
                      **********************************************98..............479***************************** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                      + l+++++++ pgEa+aVn++lqlhrll    + ++sl+ ++d vL+ + s++Pk+++vveqeadhn++s+lerf++al yy a+fds+ea + 
  PH01000254G0530 237 DGLRPWMFHLIPGEAVAVNSILQLHRLLvdpdAAQTSLPAPIDIVLDWIASMQPKIFTVVEQEADHNKPSLLERFTNALFYYGAMFDSMEALAC 330
                      ****************************44433344555599***********************************************88876 PP

             GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                       +   + + + +++l+rei ++v+ eg+ r erhe l +Wrerle+aG  +
  PH01000254G0530 331 LTGgGAGSALAEAYLQREILDIVCGEGSGRAERHELLPRWRERLERAGGAQ 381
                      6666999999*************************************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.12444409IPR005202Transcription factor GRAS
PfamPF035147.7E-8370381IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDPAAALAAA LPLPTQAAAA ATSGAAYCVD RAMYASVLPD MAAPRAVLSA AEDEAARGRQ  60
EEEEKAAIRL VHLLVTCAGA IQAGDYASAA GNLADARAIL STISTATGIG RVGKHFAAAL  120
SQRLFPAFPH SAPPPPPPAE QGELYHHFYE AGPYLKFAHF TANQAILEAF EGCTHVHVVD  180
FALMQGLQWP ALIQALAIRP GGPPRDELRE VGLRLAELAR SVNVPFFFRG VTSDQLDGLR  240
PWMFHLIPGE AVAVNSILQL HRLLVDPDAA QTSLPAPIDI VLDWIASMQP KIFTVVEQEA  300
DHNKPSLLER FTNALFYYGA MFDSMEALAC LTGGGAGSAL AEAYLQREIL DIVCGEGSGR  360
AERHELLPRW RERLERAGGA QDPAGDHAAP RVLRRWVLDQ GERRLPHTLV VQPAAVLCVG  420
VASNRSDEGC RRRHRGAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-37704204362GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000254G0530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.11e-154DELLA protein SLR1
TrEMBLA0A0E0L6201e-158A0A0E0L620_ORYPU; Uncharacterized protein
STRINGOPUNC05G24270.11e-158(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.16e-71GRAS family protein