PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000254G0620
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 343aa    MW: 37002.9 Da    PI: 8.4929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000254G0620genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.41.5e-15268293126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ + +tG C+yGd+C+FaHg
  PH01000254G0620 268 FKTELCNKWEETGACPYGDQCQFAHG 293
                      79***********************9 PP
2zf-CCCH26.31.3e-08306331126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykte Cr  +++G C+yG rC+F H+
  PH01000254G0620 306 YKTEVCRMVLAGGVCPYGHRCHFRHS 331
                      9**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-18264300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10264299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601267295IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10267294IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-12268293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-9301333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-13301331IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5305332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657305333IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-6306331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MQEALLPPSH PNLHSGFGPK PLGFGDRRLS SLSSPNLLTN GDDLFYGCYS PFSPSGGGPS  60
SPSPRATSLS HRSSSSDSLV GEFDGAAMTE HRHHLARLAL QFQEVANRYE LCLSHLADAA  120
DEAAALRVEN VELRVANNDL ARRIAMLGGK QGSAIALADE LRCLRLGEEQ TMPAPPTPTG  180
PSAQARPPGS AAEKHAVLPK SISIRSTGYL KMNQSSKHRV SKPVNVGSQR VFVGMNGASA  240
KGEEQKGSEK KDQLTGGLEF EVFNQGMFKT ELCNKWEETG ACPYGDQCQF AHGVAELRPV  300
IRHPRYKTEV CRMVLAGGVC PYGHRCHFRH SITPADRLLL RP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-23268331467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000254G0620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063541e-156AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640820.11e-150zinc finger CCCH domain-containing protein 39
SwissprotQ6L5G11e-152C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0E0L6261e-154A0A0E0L626_ORYPU; Uncharacterized protein
STRINGOPUNC05G24330.11e-155(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-61C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]