PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000255G0320

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 135aa MW: 14687 Da PI: 10.4573

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000255G0320	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00051	33	66	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ + Lr+l+ + +K + a++L++A+ YIk L PH01000255G0320 33 LGDRVAVLRQLVSPF-----GKSDTASVLQEATGYIKFL 66 556677788888887.....899**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.693	17	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-9	28	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.21E-4	31	71	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.6E-6	31	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MAIMACRCRF HLMSLFMVNQ RSDHKKQVKN DRLGDRVAVL RQLVSPFGKS DTASVLQEAT 60 GYIKFLHQQL QVLGLPYLRG SVVGGGGGVP VNAEYCNLRS RGLCTAPVEL AQQLTQSNGA 120 DMWAPAPANS SKRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000255G0320

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319652.1	2e-42	transcription factor bHLH153-like
Swissprot	Q9LT67	1e-28	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A1B6PLR5	4e-41	A0A1B6PLR5_SORBI; Uncharacterized protein
STRING	Sb06g021190.1	7e-42	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5272	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31730.1	1e-29	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]