PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000256G0030
Common NameWRKY11-2
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 341aa    MW: 37290.5 Da    PI: 6.8309
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000256G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.4e-32197254259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  PH01000256G0030 197 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGHHTHH 254
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33181256IPR003657WRKY domain
SuperFamilySSF1182901.12E-28189256IPR003657WRKY domain
PROSITE profilePS5081130.836191256IPR003657WRKY domain
SMARTSM007745.5E-37196255IPR003657WRKY domain
PfamPF031064.5E-25197254IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSSGRRGGDR HGLYHQHGHS HLGRADGADY VFSGSEMESF FFNQLAGVGG GGAGGADEIM  60
PYSSITDYLQ GLDPTGLAWH LDVPCPAQDA LVKHELSVDV MSYDSQGTGS AAGEGVVLVT  120
PNSSVYFSSS DGEEEGKSRR CKKGRAKAEE EEVVEDEKDE EDGENSKKAN KPKKKAEKRQ  180
QQPRVAFLTK SEVDHLEDGY RWRKYGQKAV KNSPYPRSYY RCTTPKCGVK KRVERSYQDP  240
STVITTYEGH HTHHSPASLR GGSAHLFTPN VHALPPHLMP GGFHPDLISL MHPMGANPNM  300
YLPSIPPPPS PMAAPPLQQH HLTDFALLQD FFPSTMPNNP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-291892571078Probable WRKY transcription factor 4
2lex_A6e-291892571078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000256G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU7262300.0KU726230.1 Phyllostachys edulis WAKY 11-2 protein (WRKY11-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969225.11e-158probable WRKY transcription factor 71
TrEMBLA0A140F5840.0A0A140F584_9POAL; WAKY 11-2 protein
STRINGSi002019m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-45WRKY DNA-binding protein 71