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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PH01000256G0700 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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| Family |
TCP |
| Protein Properties |
Length: 154aa MW: 16063.6 Da PI: 11.3212 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000256G0700 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 56.4 | 1.2e-17 | 64 | 98 | 6 | 40 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLG 40
r+ ++hTkv+gR+RR+R+sa caar+F+L++eLG
PH01000256G0700 64 PRNHDRHTKVEGRGRRIRMSAACAARIFQLTRELG 98
6899******************************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 154 aa
Download sequence Send
to blast |
MEAQVQDKAE EEESARLHAQ PGGVGCGVAA AMAIGAIPMH SFIVPKPEPV EFFGGMAMIR 60
KPPPRNHDRH TKVEGRGRRI RMSAACAARI FQLTRELGPT GHGGARGLLP VIANPLLQSS 120
GGAAISVPSG LAPITATATP TRPRPSLRCL GHR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK060536 | 2e-64 | AK060536.1 Oryza sativa Japonica Group cDNA clone:001-021-D02, full insert sequence. |
| GenBank | AK102666 | 2e-64 | AK102666.1 Oryza sativa Japonica Group cDNA clone:J033101L16, full insert sequence. |
| GenBank | AK119660 | 2e-64 | AK119660.1 Oryza sativa Japonica Group cDNA clone:002-130-H12, full insert sequence. |
| GenBank | AP004632 | 2e-64 | AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08. |
| GenBank | AP014964 | 2e-64 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 2e-64 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
| GenBank | D87261 | 2e-64 | D87261.1 Oryza sativa Japonica Group mRNA for PCF2, complete cds. |
