PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000260G1020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 185aa    MW: 20506.5 Da    PI: 9.1809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000260G1020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08756554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54
                      +e+Er RR+r++    +L +l+Pk     +s K  ++    L +A  YI++L
  PH01000260G1020  7 RKEIERERRQRMKGLCVKLASLIPKeH---YSSKdtMTQLGSLDEAAAYINKL 56
                     479**********************55...4444459*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.442256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-5560No hitNo description
SuperFamilySSF474593.66E-10672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-6756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-6862IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MATTLKRKEI ERERRQRMKG LCVKLASLIP KEHYSSKDTM TQLGSLDEAA AYINKLKERL  60
DELQRRRSSA QLMASMRGGV STSMTTTTTS GGVGSELQGE EAAPVVEVRH HDGSSLDVVL  120
ICSVERPFKF HEVITVLEEE GAEILNANFS VTGHKIFYTI HSRAFSSRIG IEVSRVSERL  180
RALV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000260G1020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565225.12e-84transcription factor bHLH162
TrEMBLA0A3B6FEY02e-86A0A3B6FEY0_WHEAT; Uncharacterized protein
STRINGBRADI2G00720.16e-84(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-13bHLH family protein