PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000260G1030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 215aa    MW: 23065.2 Da    PI: 10.1042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000260G1030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-073395555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C..............TTS-.STCHHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPk.as...........kapskK.lsKaeiLekAveYIksLq 55
                      + +E++RR +++    +L +l+P  a              ++    +  + L  A  YIk+L+
  PH01000260G1030 33 RKDVEKNRRLHMKGLCLKLSSLIPAtAKhhhlhysnsspPSNK-DtITQLDHLDNAAAYIKQLK 95
                     5789*********************666*********743344.3599**************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.882894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1130106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-931106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-43394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003334100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MKSRRQSSGG SASAAAAAAG EGNNTSGGCK MERKDVEKNR RLHMKGLCLK LSSLIPATAK  60
HHHLHYSNSS PPSNKDTITQ LDHLDNAAAY IKQLKERIDE LKQKKEGGGA ARFSSSSSSG  120
EAKPTAGGVR VSMPVIEVRY QDATLDVVLI SKVGKPFKLH EVITVLEQEG AEVVNASFSV  180
IGDKIFYTIH SQALSSRIGL EASRVSERLR DLLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000260G1030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0942130.0FP094213.1 Phyllostachys edulis cDNA clone: bphylf003c24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967963.16e-89transcription factor bHLH168
TrEMBLA0A446P8Q28e-89A0A446P8Q2_TRITD; Uncharacterized protein
STRINGSi002847m2e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.18e-23bHLH family protein