PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000261G0890
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 246aa    MW: 27143.4 Da    PI: 8.4743
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000261G0890genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.36.6e-32181371128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelv++yL++kv++ + ++  +i++vd+y+++PwdLp + + +       s+r + ++t + + r++++g  + tg+ k+ ++
  PH01000261G0890  18 LPPGFRFHPTDEELVTHYLCRKVARLPPPV-PIIADVDLYRFDPWDLPGTWRCSGGGSGTSSRRGR-ASTPTGRGRTARRG--EGTGRPKKPVA 107
                      79*************************999.88***************644333333333344444.44555556666656..67888776666 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +vg+kk Lvfy+grap+g+ktdW+mheyrl
  PH01000261G0890 108 ----AVGVKKALVFYSGRAPRGVKTDWIMHEYRL 137
                      ....7***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-4214161IPR003441NAC domain
PROSITE profilePS5100541.88618161IPR003441NAC domain
PfamPF023653.9E-1919137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MESCARREGR DAEAALNLPP GFRFHPTDEE LVTHYLCRKV ARLPPPVPII ADVDLYRFDP  60
WDLPGTWRCS GGGSGTSSRR GRASTPTGRG RTARRGEGTG RPKKPVAAVG VKKALVFYSG  120
RAPRGVKTDW IMHEYRLADA HRNNAGHSKL DEWVLCRLYN KKNNWEKVKA KAEAERSAAA  180
VTVDTLSDSV EMHGVSDVNN SYSYADMTAH ELDVAVMEDN NGWFTGLDLD DSQASCTGLG  240
PVWRW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5371674174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000261G0890
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9853299e-43GQ985329.1 Triticum aestivum transcription factor TaNAC4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181126.12e-72NAC domain-containing protein 68-like
SwissprotQ52QH41e-71NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A446NT848e-74A0A446NT84_TRITD; Uncharacterized protein
TrEMBLD9HQE08e-74D9HQE0_WHEAT; NAC transcription factor 4
STRINGTRIUR3_04332-P18e-74(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148451121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.19e-34NAC domain containing protein 102
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]