PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000264G0220

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C3H

Protein Properties

Length: 916aa MW: 97938.9 Da PI: 4.9704

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000264G0220	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.6e-06	332	351	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G C++G +C++ H PH01000264G0220 332 PCKFFAE-GRCRRGQNCPYLH 351 8****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	16.408	327	354	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-7	328	352	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-5	328	353	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	331	353	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence Send to blast
MTGDARKEGS KWDRKEGYPD IVEISEDESL PTSTDDHCKD GDSLPSQDFT NGSGNQLGES 60 SNPKPDASMQ QGSAGHEQER TDGFNKDIKE RQSKASSERS QPPRMADEEH NNNDWGKSGL 120 GKATGNQGCC LIQMHGGSGV AVHLQEVFGT GHAGTEAAPE AGAGAEGEVE AEAEAEAEAE 180 AEVLILLTVD LSGGLREAEH LEDPLCPVEI LPLVDAEEAL IAGFLMKMVS PGSLTSIILE 240 TQGKGMDISP RSSWIHENQM TIYGAGNLEV IMMKGLGKDL NLEGITSLLN NAMILSKEGA 300 AEVQAADMFM MILPLMVDGE MRTEHRRANK NPCKFFAEGR CRRGQNCPYL HEEAPQSQMG 360 LAAPDEPLNY NDGCITRGNY SNWGEQTNAT HASSQILSRD DRENPGSQGT GRSDSRYELK 420 TQHLKDAGRN QYQIFHQEDF GSQGQNKPEV AASQQPQFLN PIQTSADSTS NGKVSGMDGQ 480 SAPATTGNLT MQTGIHAANL IGGQNLGQIA QSQDAVPQIP GAPTLPVTTQ LQNAASSLPL 540 NSQPQQSDYS LLPNRQDQLV VPHAAANNSA PSMQSPPVDP YMGHKQHAYS LGAQALPDLS 600 ALNGRICNVT SQFPQNLPTT VHAAQSQATI DIPKPSKDSG TQSIQNTHNF QPVTPNVQTQ 660 SQILQGLSVV RSSSSADMVG APVSHNAATN VDVSRVAASL AQYFGNAAGT VVLKPSQPNL 720 NSSLMITSSA APPTVQPNPW PWAQQQAGMV QPAPSVPSEQ QAPQTFQIPM AVGSSNGNPV 780 LLPHLVAPTG HASTSVVNET VPSENKKGEP KDTDAEAHED GDNKKTKDSK ALKLFKLALA 840 DFVKDALKPT WKEGQLSREV HKTIVKKVVD KVTSTVENIP QTKEKIDIYM SYSREKLNKL 900 VQVTTASSRI TFLPL*

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence Send to blast

MTGDARKEGS KWDRKEGYPD IVEISEDESL PTSTDDHCKD GDSLPSQDFT NGSGNQLGES  60
SNPKPDASMQ QGSAGHEQER TDGFNKDIKE RQSKASSERS QPPRMADEEH NNNDWGKSGL  120
GKATGNQGCC LIQMHGGSGV AVHLQEVFGT GHAGTEAAPE AGAGAEGEVE AEAEAEAEAE  180
AEVLILLTVD LSGGLREAEH LEDPLCPVEI LPLVDAEEAL IAGFLMKMVS PGSLTSIILE  240
TQGKGMDISP RSSWIHENQM TIYGAGNLEV IMMKGLGKDL NLEGITSLLN NAMILSKEGA  300
AEVQAADMFM MILPLMVDGE MRTEHRRANK NPCKFFAEGR CRRGQNCPYL HEEAPQSQMG  360
LAAPDEPLNY NDGCITRGNY SNWGEQTNAT HASSQILSRD DRENPGSQGT GRSDSRYELK  420
TQHLKDAGRN QYQIFHQEDF GSQGQNKPEV AASQQPQFLN PIQTSADSTS NGKVSGMDGQ  480
SAPATTGNLT MQTGIHAANL IGGQNLGQIA QSQDAVPQIP GAPTLPVTTQ LQNAASSLPL  540
NSQPQQSDYS LLPNRQDQLV VPHAAANNSA PSMQSPPVDP YMGHKQHAYS LGAQALPDLS  600
ALNGRICNVT SQFPQNLPTT VHAAQSQATI DIPKPSKDSG TQSIQNTHNF QPVTPNVQTQ  660
SQILQGLSVV RSSSSADMVG APVSHNAATN VDVSRVAASL AQYFGNAAGT VVLKPSQPNL  720
NSSLMITSSA APPTVQPNPW PWAQQQAGMV QPAPSVPSEQ QAPQTFQIPM AVGSSNGNPV  780
LLPHLVAPTG HASTSVVNET VPSENKKGEP KDTDAEAHED GDNKKTKDSK ALKLFKLALA  840
DFVKDALKPT WKEGQLSREV HKTIVKKVVD KVTSTVENIP QTKEKIDIYM SYSREKLNKL  900
VQVTTASSRI TFLPL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000264G0220

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174957.1	0.0	zinc finger CCCH domain-containing protein 55-like isoform X2
Swissprot	Q6YYC0	0.0	C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBL	N1QR93	0.0	N1QR93_AEGTA; Zinc finger CCCH domain-containing protein 55
STRING	EMT02379	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7766	34	43

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]