PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000271G0420

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

WRKY

Protein Properties

Length: 220aa MW: 23128.4 Da PI: 7.5899

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000271G0420	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.5e-31	132	190	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg Hnh PH01000271G0420 132 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTTYEGMHNHV 190 59********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-33	118	192	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-28	124	192	IPR003657	WRKY domain
PROSITE profile	PS50811	31.686	127	192	IPR003657	WRKY domain
SMART	SM00774	1.2E-35	132	191	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	133	189	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MAAVGARPVF YHQPAPAGDA CFSMSSYFSH GGSSTSSSPS SFSAALGAPP PPLADQAAQF 60 DISEYLFDGG AGGAGGVFAA PPDGPPVVVP DGASHGAAGA SATTHARSAA EAVERPRTER 120 IAFRTRSEIE ILDDGYKWRK YGKKSVKNSP NPRNYYRCST EGCNVKKRVE RDKDDPSYVV 180 TTYEGMHNHV SPSTVYYASQ DAASGRFFVA GTQPPPGSLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-26	123	193	8	78	Probable WRKY transcription factor 4
2lex_A	4e-26	123	193	8	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000271G0420

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099367	0.0	FP099367.1 Phyllostachys edulis cDNA clone: bphylf033k16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020192531.1	6e-95	probable WRKY transcription factor 51
Swissprot	Q93WU9	2e-45	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A3L6T2D7	2e-94	A0A3L6T2D7_PANMI; Uncharacterized protein
STRING	OB05G31630.1	1e-89	(Oryza brachyantha)
STRING	Sb09g026830.1	2e-93	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	3e-41	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]