PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000273G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ZF-HD
Protein Properties Length: 183aa    MW: 18543.4 Da    PI: 6.5736
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000273G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.61.3e-3274128358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e +
  PH01000273G0040  74 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKELD 128
                      689*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.9E-3075127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-3176126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2476128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.73577126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDLSGTQGGL PIPMHTASPY GGGELHHDHA NNNGQSHSQA LPSPPAAAEN SGKKRTAGVV  60
AGAGIGGGGG GGPAVKYREC LKNHAAAIGG NATDGCGEFM PSGEEGSLEA LKCSACGCHR  120
NFHRKELDDF DSDSCAAHGM GHAPVGAVTV SCMSDLIRSP HQEKRKDFLV KKQGGESDGW  180
DA*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000273G0040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3615797e-92AK361579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1144B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179853.18e-57zinc-finger homeodomain protein 4-like isoform X1
SwissprotQ53N871e-45ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A3B6JHA72e-55A0A3B6JHA7_WHEAT; Uncharacterized protein
TrEMBLA0A453HG377e-56A0A453HG37_AEGTS; Uncharacterized protein
TrEMBLA0A453HGH92e-55A0A453HGH9_AEGTS; Uncharacterized protein
TrEMBLA0A453HH279e-56A0A453HH27_AEGTS; Uncharacterized protein
STRINGTraes_4BS_7322F0DC2.46e-56(Triticum aestivum)
STRINGTraes_4DS_F3750ABFD.16e-56(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.27e-29homeobox protein 31