PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000274G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 484aa    MW: 50820.1 Da    PI: 8.2082
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000274G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.6e-29249308159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++++tYeg+H h+
  PH01000274G0230 249 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCVDDMSILITTYEGTHSHP 308
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-31234310IPR003657WRKY domain
SuperFamilySSF1182909.42E-27242310IPR003657WRKY domain
PROSITE profilePS5081127.634244310IPR003657WRKY domain
SMARTSM007747.9E-35249309IPR003657WRKY domain
PfamPF031069.4E-26250308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEVAVERPPM KEEKKVDAKA PEIAAIGSAP PIVFESFPST QRDPVIKKDD KLEATKAEMG  60
EVREENERLK TLLSHIVRDY QSLQMHFLDV VKVKEQAADK IPAPAADVPP PAAGDDLVSL  120
SLGTRPNGST RRKGHERSAS SGTETDHDGQ QLSLGLSCAR GSSRPSKSND DKQASRPLAP  180
VLNLSSDSSA DDAAEPCQTA GCPPTKACKR SRGGGGGGNA GDGADDEVLQ QQARKARVSV  240
RVKCDTPTMN DGCQWRKYGQ KISKGNPCPR AYYRCTVAPS CPVRKQVQRC VDDMSILITT  300
YEGTHSHPLP PAAAAMASTT SAAASMLMAG PSSSHSHFPF TSAGAGLLGP TTISTATSCP  360
TVTLDLTAPH SLLHPSPYAA AGYESRALPA AWSSGYLAYG GGQPYYAKSQ TPAMGHFGLG  420
MARPEQLYGQ SYHLQRTSGG HGAVEPAMTD TIAKAITSDP SFQSVLAAAI TSYMGRGGGA  480
AAQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20236312176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000274G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0980430.0FP098043.1 Phyllostachys edulis cDNA clone: bphyem204o18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457211.10.0probable WRKY transcription factor 72
TrEMBLA0A287KCW40.0A0A287KCW4_HORVV; Uncharacterized protein
STRINGSb03g003370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-52WRKY DNA-binding protein 72