PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000276G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family DBB
Protein Properties Length: 272aa    MW: 28935.7 Da    PI: 5.1678
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000276G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ ++++++   C  ++  lC  C   +H+       H++ pl
  PH01000276G0310  4 QCDVCGQEPAAVLCCADEAALCSACDRRIHQAnklagkHRRLPL 47
                     7*****************************77889999988775 PP
2zf-B_box20.97.3e-0760100337
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++ C+ ++e +   fC +++  lC+ C + +H+       H
  PH01000276G0310  60 PPLCDVCKERRGFVFCVEDRAILCAGCDEPIHSAneltakH 100
                      679*******9*********************655565555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-11147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000211.30E-7347No hitNo description
PfamPF006437.7E-6447IPR000315B-box-type zinc finger
SMARTSM003364.0E-1558105IPR000315B-box-type zinc finger
PROSITE profilePS501199.15858105IPR000315B-box-type zinc finger
CDDcd000215.07E-761105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MRVQCDVCGQ EPAAVLCCAD EAALCSACDR RIHQANKLAG KHRRLPLLHP SLPTNDTAAP  60
PLCDVCKERR GFVFCVEDRA ILCAGCDEPI HSANELTAKH SRFLLVGAKL SAPFADQEIP  120
SPEGGSDVAA EDSSLVDSHG GGGGGSSSIS DYLTNICPGW RVEDLLLDDA AFAAAAAAKG  180
RDEQVPFLDA DLFDVVAGRP EKRGAWAPHV PQTPTLAWGL EEVLAAMAAP ATAKTKQGHV  240
RERYWSDSDA LAVPEISPPP AKRARPSSFW CF
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000276G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0956360.0FP095636.1 Phyllostachys edulis cDNA clone: bphyst009j05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146276.11e-122B-box zinc finger protein 20-like
TrEMBLF2DHB01e-125F2DHB0_HORVV; Predicted protein
STRINGMLOC_57879.11e-126(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-36DBB family protein