PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000279G0700

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HB-other

Protein Properties

Length: 1298aa MW: 145139 Da PI: 6.708

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000279G0700	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.7	9.4e-14	20	72	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e+++e A+++gL +qV++WF+ rR ke++ PH01000279G0700 20 TKKSPLQIQMLERFYSEVQYPKPEDMAEYATSVGLAYSQVRIWFKERRRKERR 72 566899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-13	12	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.754	13	73	IPR001356	Homeobox domain
SMART	SM00389	1.6E-13	15	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.69E-12	16	76	IPR009057	Homeodomain-like
Pfam	PF00046	4.1E-11	20	72	IPR001356	Homeobox domain
CDD	cd00086	8.46E-8	20	63	No hit	No description
Pfam	PF15612	2.3E-5	632	663	IPR028942	WHIM1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1298 aa Download sequence Send to blast
MPSAQMMING LEAKRENAGT KKSPLQIQML ERFYSEVQYP KPEDMAEYAT SVGLAYSQVR 60 IWFKERRRKE RREMEAIGAH MERQLGARSN GLRCNSSRSS SFSQGPMYNT VGLQPEDDSY 120 VDRSTSFVGE KHILLSQVLF PKDYILRKVF RKDGPALGSE FDPLPRSAHG HLRAMPPVAN 180 EVGDTTGYRS YQNQRVVKKR KIMESTTHRS TLPCEDSGPV RKHGIGKGLM TVWHAMYSCN 240 GEIQTGSNFI DETGSLRSLR PFNDCDRLED HGDGKLIQKQ IMARKKVDKR SKPPPNKRKV 300 PCSRVTIPKE HPPVECHLSV DESESSELRT EQPTLVDDEE LELSELQAGP NPLRCSAHLS 360 SNGRHGCPLC KDLLARFPPL SVMMKQPFST RPWESSPEMV KKLFQVVRFI YTHFGSMDVH 420 PFTFDEFAQA FHDKVREQEF DVNFWIKSLN SLTWVEILRQ VLVASGFGSK HHMLNRDFFN 480 KEKNQMVKYG LCPRTLKGEL FVLLSKKGSG GLKVSELAKA PEIVDLSLSD TSEVEQLIYS 540 TLSSDITLFE KIAHSAYRLR VDPRIKGKED PTSDTEDSGS VDGDGDASSS GDESDGSQEM 600 SFSEHQRRIV RRKQKNVHEN LNKCSEIDES YSGERWLLGL MEGEYSDLSI DEKLDCLVAL 660 MDVVSGAGSV PRLEAIVNMQ NQIAEIVQHN PDLQTQVADL ARQGAVTNAH LTAMEKKTAE 720 GAFSLTAPEI LTIPMATSSP SPTIPTTAPP ASTLPLASTI PPITMPLASF PIPNASALSN 780 FPFTTMPSTT FTTPPVHTNL MHGPVQICHH HCRQQPNPPP PIANGPHLAF PASTKFPTYD 840 GEDDPLAWLN RCEQFFCSHR TDEVDKEPQR VLPNMPRTQL HASGGKIKKS TRNIYQSSDE 900 YLNRSGSLYS LDSSKQGQSA SRRKQDYIAN SGRNDSSTGV AHQPQIVLLG SDRRADDPGH 960 RRVYFESSED GHWEELLSLL SVLDSRGTRE AHLLASMKKR QACLFEAMKN HLEDGNAVEI 1020 ATSSDPSRSE TSSGDGASPI SDIDNASVPT DLADNLLNPS SAILIEVGRR GDEKILKWER 1080 LQALDKWIWA SFYSSLTAVK CGKKSFKESL VRCESCHDLY WRDEKHCRIC HSTFEVGLDL 1140 EERYAIHVAI CREPEDVYGV PNHKVLPSQL QTLKAAIHAI EACMPEAAFA GLWMKSSHKL 1200 WVKRLRRTSS LPELLQVLVD FAGAMDEDWL YKSSSSVSFS SYLDDITVYF QTMPQTTSAV 1260 ALWVVKLDAL VAPYLERADS ERAFAKESIQ TMISETP*

Sequence ? help Back to Top

Protein Sequence Length: 1298 aa Download sequence Send to blast

MPSAQMMING LEAKRENAGT KKSPLQIQML ERFYSEVQYP KPEDMAEYAT SVGLAYSQVR  60
IWFKERRRKE RREMEAIGAH MERQLGARSN GLRCNSSRSS SFSQGPMYNT VGLQPEDDSY  120
VDRSTSFVGE KHILLSQVLF PKDYILRKVF RKDGPALGSE FDPLPRSAHG HLRAMPPVAN  180
EVGDTTGYRS YQNQRVVKKR KIMESTTHRS TLPCEDSGPV RKHGIGKGLM TVWHAMYSCN  240
GEIQTGSNFI DETGSLRSLR PFNDCDRLED HGDGKLIQKQ IMARKKVDKR SKPPPNKRKV  300
PCSRVTIPKE HPPVECHLSV DESESSELRT EQPTLVDDEE LELSELQAGP NPLRCSAHLS  360
SNGRHGCPLC KDLLARFPPL SVMMKQPFST RPWESSPEMV KKLFQVVRFI YTHFGSMDVH  420
PFTFDEFAQA FHDKVREQEF DVNFWIKSLN SLTWVEILRQ VLVASGFGSK HHMLNRDFFN  480
KEKNQMVKYG LCPRTLKGEL FVLLSKKGSG GLKVSELAKA PEIVDLSLSD TSEVEQLIYS  540
TLSSDITLFE KIAHSAYRLR VDPRIKGKED PTSDTEDSGS VDGDGDASSS GDESDGSQEM  600
SFSEHQRRIV RRKQKNVHEN LNKCSEIDES YSGERWLLGL MEGEYSDLSI DEKLDCLVAL  660
MDVVSGAGSV PRLEAIVNMQ NQIAEIVQHN PDLQTQVADL ARQGAVTNAH LTAMEKKTAE  720
GAFSLTAPEI LTIPMATSSP SPTIPTTAPP ASTLPLASTI PPITMPLASF PIPNASALSN  780
FPFTTMPSTT FTTPPVHTNL MHGPVQICHH HCRQQPNPPP PIANGPHLAF PASTKFPTYD  840
GEDDPLAWLN RCEQFFCSHR TDEVDKEPQR VLPNMPRTQL HASGGKIKKS TRNIYQSSDE  900
YLNRSGSLYS LDSSKQGQSA SRRKQDYIAN SGRNDSSTGV AHQPQIVLLG SDRRADDPGH  960
RRVYFESSED GHWEELLSLL SVLDSRGTRE AHLLASMKKR QACLFEAMKN HLEDGNAVEI  1020
ATSSDPSRSE TSSGDGASPI SDIDNASVPT DLADNLLNPS SAILIEVGRR GDEKILKWER  1080
LQALDKWIWA SFYSSLTAVK CGKKSFKESL VRCESCHDLY WRDEKHCRIC HSTFEVGLDL  1140
EERYAIHVAI CREPEDVYGV PNHKVLPSQL QTLKAAIHAI EACMPEAAFA GLWMKSSHKL  1200
WVKRLRRTSS LPELLQVLVD FAGAMDEDWL YKSSSSVSFS SYLDDITVYF QTMPQTTSAV  1260
ALWVVKLDAL VAPYLERADS ERAFAKESIQ TMISETP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	72	RRRKERRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000279G0700

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646956.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	B8B8L7	0.0	B8B8L7_ORYSI; Uncharacterized protein
STRING	OGLUM07G22360.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-100	Homeodomain-like transcriptional regulator