PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000280G0820
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 160aa    MW: 17414.2 Da    PI: 5.107
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000280G0820genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.65e-2256118163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elk+++rkq+NRe+ArrsR+RK+ae+eeL++ +++L+aeN++L+ ele++kke+++l s++
  PH01000280G0820  56 ERELKKQKRKQSNRESARRSRLRKQAECEELAQCAETLKAENSSLRAELERIKKEYEELLSQN 118
                      89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165962.8E-9135No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-1554117No hitNo description
SMARTSM003381.8E-2156120IPR004827Basic-leucine zipper domain
PfamPF001702.1E-2056118IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.79458121IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-1059116No hitNo description
CDDcd147022.36E-2061111No hitNo description
PROSITE patternPS0003606378IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSMVPIQSGA VIGGVAGPTT NLNIGMDYWG ATGSSPVAAI HGKAPSGSVR GEQWDERELK  60
KQKRKQSNRE SARRSRLRKQ AECEELAQCA ETLKAENSSL RAELERIKKE YEELLSQNAS  120
LKEKLGETSD SIPDMNEQND ANGSYHKQPD SDAQPDDAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278RRSRLRK
27279RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000280G0820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626323.15e-87transcription factor HBP-1a
RefseqXP_015626324.15e-87transcription factor HBP-1a
SwissprotP239221e-74HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLA0A0E0JV201e-86A0A0E0JV20_ORYPU; Uncharacterized protein
STRINGOPUNC02G01690.22e-87(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.17e-33basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]