PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000285G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 130aa    MW: 13939.7 Da    PI: 7.8911
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000285G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.81.2e-334599155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     ++rlrWt+eLH++Fveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  PH01000285G0200 45 RQRLRWTNELHDQFVEAVTQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 99
                     58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.17942102IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-3244100IPR009057Homeodomain-like
SuperFamilySSF466899.5E-1944100IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-2646100IPR006447Myb domain, plants
PfamPF002491.4E-94798IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MYQPNPISSI GPTHSDPAAH NQMELGGNGM VPTNGGNTNP NMAARQRLRW TNELHDQFVE  60
AVTQLGGPDR ATPKGVLRVM GVPGLTIYHV KSHLQKYRLA KYIPDPSADD NKAEKKDPGD  120
LLAALEGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-2645102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2645102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2645102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2645102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00628PBMTransfer from PK10342.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000285G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973261.13e-76myb family transcription factor PHL7
SwissprotQ9SJW08e-44PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLK3YIT37e-75K3YIT3_SETIT; Uncharacterized protein
STRINGSi014152m1e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-46G2-like family protein