PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000286G0980
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 323aa    MW: 32458.3 Da    PI: 9.6776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000286G0980genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-11126171555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++++k Lq
  PH01000286G0980 126 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDFVKFLQ 171
                      99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.18E-12119175No hitNo description
SuperFamilySSF474594.19E-16119181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.71121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-15123180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-8126171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MLQLSDLHRQ GLTAPGGEEN GGGAFSPLPL FTDRASAPAL EEMEGGFKSP NAAGGDHALF  60
NGFGVHAPAA VQPPFGQGGS MSGQSFGAPA ASAGTAPASS GGGSRGAAPP RQQRVRARRG  120
QATDPHSIAE RLRRERIAER MKSLQELVPN ANKTDKASML DEIIDFVKFL QLQVKVLSMS  180
RLGGAAGMAP LVARMSSEGI SDGKSNSSGG NGNASKGSGN GAESAGGSLR VTEQQVAKMM  240
EEDMGTAMQY LQGKGLCLMP ISLASAISSA TTSTSLLSRP AVRHAGGQLH VGTGPTSPAL  300
ANGAAGGDDP QSVKDGGAGG KQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000286G0980
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126143e-52CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693472.11e-132PREDICTED: transcription factor bHLH69-like
SwissprotQ9ZUG91e-76BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0P0WTJ81e-131A0A0P0WTJ8_ORYSJ; Os06g0184000 protein
STRINGOS06T0184000-001e-132(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-41LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]