PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000290G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Dof
Protein Properties Length: 191aa    MW: 20031.6 Da    PI: 8.478
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000290G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof64.81.5e-2031632860
           zf-Dof 28 qPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      Pr+fCk CrryWtkGG+lrnvPvGgg+rk+ +
  PH01000290G0170 31 APRHFCKCCRRYWTKGGTLRNVPVGGGTRKKSS 63
                     6*****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027014.3E-153163IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-123260IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MPLTRGPVAV VAAVVMDVSR GWGTVALARR APRHFCKCCR RYWTKGGTLR NVPVGGGTRK  60
KSSSFPPLSS SGAAAKRQKP SKKRRVANPE PAPDSAKTTE TTTTPPTDAA SEITTELVVP  120
AAEEDSFTDL LQPDDAAAVA LGLGFSDYPT GGKALLDPDS FEWPPAFDLG AYWSSAGFAD  180
PDPGVFLNLP *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000290G0170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0951600.0FP095160.1 Phyllostachys edulis cDNA clone: bphyem122d01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650493.11e-54dof zinc finger protein MNB1A
SwissprotP385646e-41MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBLA0A0D9X9633e-55A0A0D9X963_9ORYZ; Uncharacterized protein
STRINGLPERR08G15690.16e-56(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21270.19e-15DOF zinc finger protein 2
Publications ? help Back to Top
  1. Yanagisawa S,Izui K
    Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif.
    J. Biol. Chem., 1993. 268(21): p. 16028-36
    [PMID:8340424]