PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000293G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 506aa    MW: 55484.1 Da    PI: 6.0256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000293G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-06265286223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F+r  nL+ H+r H
  PH01000293G0050 265 FCLICGKGFKRDANLRMHMRGH 286
                      5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.76E-5262289No hitNo description
PROSITE profilePS5015711.552264291IPR007087Zinc finger, C2H2
SMARTSM003550.012264286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-5266290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035571313346IPR015880Zinc finger, C2H2-like
SMARTSM0035522351373IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MASDESRNTD PSQQGVRFNP MDQSYFARPG QSFPAFPPFF GAQSSSLYLP DDSEAKVGNQ  60
FESNPSLNNP TLGWDPQAML SNLSFLEQKI KQVKDIVQTM SNRESQVAGG SCELAAKQQL  120
VTADLTCIII QLISTAGSLL PSMKNPLLSS NPAVRQLSST LGSPMSFGSN ANQRPSTNNE  180
ATIPEITKTT DYDELMNNLN TTHDERDDPI KCPNPCGGEG FEPIPMEDHD VKESDDGGEG  240
ENLPPGSYVV LQLEKEEILA PHTHFCLICG KGFKRDANLR MHMRGHGDEY KTPAALAKPM  300
KDFSSEPAPV TRYSCPFVGC KRNKEHKKFQ PLKTILCVKN HYKRSHCDKS YTCSRCNTKK  360
FSVIADLKTH EKHCGRDKWL CSCGTTFSRK DKLFGHVVLF QGHTPALPMD DIKATGASEH  420
PQGSEAMNDM VGSKGYNFAG SSSDGISNLD MKVADDTRCY FSPLNFDPCF GGLDEFTRPG  480
FDVSENPFSF LPSGSCGFGQ QNGDN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000293G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564719.10.0zinc finger protein STOP1 homolog
RefseqXP_024315785.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0D9V8D10.0A0A0D9V8D1_9ORYZ; Uncharacterized protein
STRINGLPERR01G33350.30.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-163C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]