PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000294G0540

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HSF

Protein Properties

Length: 255aa MW: 28061.4 Da PI: 4.9867

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000294G0540	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	78.5	1.1e-24	60	119	2	61
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 Fl+k+y++++d+ +++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y PH01000294G0540 60 FLTKTYQLVDDPCTDHVVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYP 119 9*********************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.6E-26	52	118	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.3E-26	56	153	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.2E-22	59	129	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.6E-21	60	130	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-15	60	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-15	98	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-15	111	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MAARTSIVMF LVHGAVAGLF TGAPYTSAQR GQMAFLVERC SGEMVVSMEG SHAKPVPAPF 60 LTKTYQLVDD PCTDHVVSWG EDETTFVVWR PPEFARDLLP NYFKHNNFSS FVRQLNTYPP 120 PPVYHFQEDS AADSGGGDFL AALSEDNQQL RRRNSLLLSE LAHMRKLYND IIYFLQNHVE 180 PVPPPTPTPP ASCRLVELSP AECGASPQLR QRGDDTAVKL FGVRLNEGKK RRAQLEEGDG 240 DHGDGDGDDQ GSEV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-16	56	128	26	97	Heat shock factor protein 1
5d5v_B	9e-16	56	128	26	97	Heat shock factor protein 1
5d5v_D	9e-16	56	128	26	97	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000294G0540

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054148	3e-73	BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003561606.1	1e-88	heat stress transcription factor B-4d
Swissprot	Q7XHZ0	9e-49	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A0Q3LF32	2e-87	A0A0Q3LF32_BRADI; Uncharacterized protein
STRING	BRADI1G61620.1	7e-80	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-40	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]