PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000296G0390
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 490aa    MW: 51666.9 Da    PI: 8.1236
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000296G0390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.84.1e-32190248260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkve+s  d+++++i+Y+g Hnh+k
  PH01000296G0390 190 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVEHSLADGRITQIVYKGAHNHPK 248
                      8********************************************************85 PP
2WRKY107.75.5e-34358416159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++dp++v++tYeg+Hnh+
  PH01000296G0390 358 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASQDPRAVITTYEGKHNHD 416
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28177249IPR003657WRKY domain
PROSITE profilePS5081125.958184249IPR003657WRKY domain
SuperFamilySSF1182903.4E-25188249IPR003657WRKY domain
SMARTSM007741.5E-34189248IPR003657WRKY domain
PfamPF031066.4E-24190247IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-36343418IPR003657WRKY domain
SuperFamilySSF1182901.7E-29350418IPR003657WRKY domain
PROSITE profilePS5081138.021353418IPR003657WRKY domain
SMARTSM007745.2E-40358417IPR003657WRKY domain
PfamPF031062.1E-26359416IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MASSTGSLDH GGFTFTPPSF ITSFTDLLGG SGDMLAGVTS ASAEDRSPRG FPRGARGAGV  60
PKFKSAQPPS LPISPPPVSP SSYFAIPAGL SPAELLDSPV LLNYSNILAS PTTGAIPAQR  120
YDWKATADLM TSQHEESRGG FADFSFHTIN SNATGAAEQT TSFPSFKEQQ IVEVSKSVSV  180
SNKSGGNKLE DGYNWRKYGQ KQVKGSENPR SYYKCTYHSC SMKKKVEHSL ADGRITQIVY  240
KGAHNHPKPL STRRNSSGGA AARCGAVAAE DHPNGQLSAA GAGAGPEYSA ATPENSSVTF  300
GDDDADNGSQ RSDGDEPEAK RWKEDADNEG SSGGAGAGGK PVREPRLVVQ TLSDIDILDD  360
GFRWRKYGQK VVKGNPNPRS YYKCTTVGCP VRKHVERASQ DPRAVITTYE GKHNHDIPVG  420
RGGSRPLPTT SSSDATAAIR PSAVGAGQGS YTLGMLSNPG GYGGYATAGG AFQRTKDEPR  480
DDQFVESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37175418377Probable WRKY transcription factor 4
2lex_A8e-37175418377Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000296G0390
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0943240.0FP094324.1 Phyllostachys edulis cDNA clone: bphylf049a05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151406.10.0probable WRKY transcription factor 26
SwissprotQ6B6R41e-111WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1I9RYF40.0A0A1I9RYF4_9POAL; Transcription factor WRKY53
STRINGEMT331350.0(Aegilops tauschii)
STRINGTraes_1DS_A6733B734.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-94WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]