PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000298G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 378aa    MW: 40592.3 Da    PI: 7.1345
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000298G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.6e-33180237259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H h+
  PH01000298G0170 180 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHAHP 237
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-34164238IPR003657WRKY domain
SuperFamilySSF1182902.35E-28171238IPR003657WRKY domain
PROSITE profilePS5081130.458174239IPR003657WRKY domain
SMARTSM007742.3E-38179238IPR003657WRKY domain
PfamPF031069.4E-26180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSGPSHHQHH LSGDFQFHDE LASLFAQRPD ATPMQQPWFT DYLQASAPTP LDYDAFAGEF  60
DVPDVEQVKR ELVVDSSTAG VGLPGGGPGG TAAPLTPNSM SVSSTSSEAG GTGVGGYEES  120
AGKCKKEGEG EESKEASAKG GGEGEEKNKK GAAKAKVKGE KRPRQPRFAF MTKSEVDHLE  180
DGYRWRKYGQ KAVKNSPFPR SYYRCTTQKC PVKKRVERSY QDAAVVITTY EGKHAHPILS  240
TLRGSTHLLA AHSHGLHPHF RMPPPPPITF RPGGGAASAI DALGLLPQQD HHAMQMQQLL  300
GGTGASGTMH QVNATMASHA PDHGLAAMVG TTGTATTMAG SASIPLQMQH FMEHDYGLLQ  360
DMLPSFIHND DTNNYSHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-25170238876Probable WRKY transcription factor 4
2lex_A8e-25170238876Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000298G0170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016650.0FP101665.1 Phyllostachys edulis cDNA clone: bphyem202m15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961203.11e-135probable WRKY transcription factor 28
TrEMBLA0A1E5VKW31e-143A0A1E5VKW3_9POAL; Putative WRKY transcription factor 71
STRINGSi022220m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-47WRKY DNA-binding protein 71