PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000298G0910

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HB-other

Protein Properties

Length: 1808aa MW: 201855 Da PI: 5.3235

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000298G0910	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1e-17	44	98	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ + ++yp+++ r eL+ klgLt+rq ++WF+ rR k++k PH01000298G0910 44 KRVMKTPYQLEVLEKTYTDDPYPNETLRVELSVKLGLTDRQLQMWFCHRRLKDRK 98 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.59E-17	25	101	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-17	26	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.937	39	99	IPR001356	Homeobox domain
SMART	SM00389	5.2E-17	41	103	IPR001356	Homeobox domain
Pfam	PF00046	2.1E-15	44	98	IPR001356	Homeobox domain
CDD	cd00086	3.10E-14	44	100	No hit	No description
PROSITE profile	PS50827	15.749	612	671	IPR018501	DDT domain
SMART	SM00571	5.5E-17	612	671	IPR018501	DDT domain
Pfam	PF02791	5.0E-16	614	668	IPR018501	DDT domain
Pfam	PF05066	2.5E-15	794	861	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	7.7E-9	1016	1058	IPR028942	WHIM1 domain
Pfam	PF15613	7.9E-13	1150	1239	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1808 aa Download sequence Send to blast
MDSSGDGGDE SAGVGKPESP APASAPAAGG GASASGSGGK PAVKRVMKTP YQLEVLEKTY 60 TDDPYPNETL RVELSVKLGL TDRQLQMWFC HRRLKDRKPQ REEEVAVPVI APPPVLPPSL 120 PHCKLTVGSA GTHAEQLLPC SRRGPGRSSA VPRISVPEIG RRYYEPPQVM LPPQAPIQLT 180 RAERRVIDYV QELIGEPLRE DGPVLGVEFG PLPPGAFGAP IVPEQRKQPF QSYETKIFSG 240 HDPKLMKASA FPPSIDPFVP NTVTGKRKYM AGKFSHLGSQ AIQEYQFLPK QTSDVYERAG 300 QSRFYDAPTE ASNSRISSLS TGSHFLHGAE QAPNYTCHGQ ISCSGHLTQH GRPPIFPMGS 360 TDYETTPSNI NVSSAPIEGQ FGIPQVAGFE NPLASSERID YHDEDVYRLD RKRKCNEEAK 420 IAKEVDAHEK QIRKEFEKQD VLNKKREEQM RREMERHDRE RKKEEERLMR EKQREEERFQ 480 REQSREHKRM EKFLQKQSIR FSGWYLESRF PLAEKLRQKE ELRKEKEAAR QKAANERATA 540 RRIARGYMEL MEDERLELME LVSRSKGLPS MLSLDSDTLQ QLDSFRGMMR QFPTEPVRLK 600 VPFSIKPWTS SEDNIGNLLM VWKFFITFAD ILGLPSFTLD EFVQSLHDYD SRLLGELHVA 660 LLKSIVKDIK DVARTPSVAS GVNQSSSANP GGGHPQIVEG AYAWGFNILN WQRHLNFLTW 720 PEILRQFGLS AGFGSQLKKR NAEDVYYHDD NEGHDGEDVI STLRNGSAAV NAAAKMKERG 780 YTNRRKSRHR LTPGTVKFAA FHVLSLEGSK GLSILEVAEK IQKSGLRDLT TSKTPEASIS 840 AALSRDTKLF ERTAPSTYCV KTPYRKDTAD SEAVLSAARE KIRVFQNTLS ECEEVEKDVD 900 DAERDEDSEC DHADDEPDGD EVDIEEKDVK APLVKAHDGG LPPAVGDINE ELNSVVNTLT 960 QPSTYCKCRE SDSLHTLDKS SAVSTSSDPP IGASSDYHEV ATDDAQDTEI DESNQGQSWV 1020 QGLAEGDYCD LSVEERLNAL IALIGVATEG NSIRAILEAD ADQENNVAES TPVHNLDNDG 1080 NASTVNNDFL VNQQSQLNAS NIVHERNGVS WELNANPESL SVQQYASSEK TRSQLKSYIG 1140 HKAEQLYVYR SLPLGQDRRR NRYWQFSTSA SPNDPGSGRI FFESRDGYWR LIDSAEIKVN 1200 CPYHYKVARW EGIRAFDALV ASLDTRGIRE SHLHSMLQSI ESTFKEAIGR KKCANREHSV 1260 GRILKNGSSE IRSPNHSNEF GSPCSTLSGA ASDNVMHSES FKIELGRNDV EKIAISKRAC 1320 MFVKWMWREC NNHRSTCAMK YGKKRCSELM QSCNYCYQIY LTEEMHCSSC HKTFKSIHSL 1380 SEHTSQCEEK QRTDPNWRMQ ISDNSIPIGL RLLKLLLATI EASVPAEALQ PFWTDGYRKS 1440 WSIKLYSTSS TEEVFQMLTA LEGAIKRDYL SFKFETTSEL LNSNTQDFAT QNPVARSGSA 1500 AVLPWVPDTT AAVALRLLDL DSAISYTFHQ KAGSNKEREA GDFMKPPSRY TAVTNKQEME 1560 PMGATGFDQH DGNWLTPGNG RRGRGRGGRG GSRGGRSRSR GGKVSRGIGS SPKIESYEKV 1620 PRKPARRGRN RGRGRGLRTV RPRQPSELGA RSIPKTNLLG SFSMLSNAKP TTTLDSPQSS 1680 GAEEWGLEIR AYAEDDDNNS VPQSDESEET GEPMNQDYDE LLPDYSRDNS GSSPLRMVDD 1740 GTEDNDEDDE EGEEDGEDYD AEHPIDEDSD DAEMGEDDEL PDDDDGGGVE NRDEDEGGTS 1800 YSSEYSE*

Sequence ? help Back to Top

Protein Sequence Length: 1808 aa Download sequence Send to blast

MDSSGDGGDE SAGVGKPESP APASAPAAGG GASASGSGGK PAVKRVMKTP YQLEVLEKTY  60
TDDPYPNETL RVELSVKLGL TDRQLQMWFC HRRLKDRKPQ REEEVAVPVI APPPVLPPSL  120
PHCKLTVGSA GTHAEQLLPC SRRGPGRSSA VPRISVPEIG RRYYEPPQVM LPPQAPIQLT  180
RAERRVIDYV QELIGEPLRE DGPVLGVEFG PLPPGAFGAP IVPEQRKQPF QSYETKIFSG  240
HDPKLMKASA FPPSIDPFVP NTVTGKRKYM AGKFSHLGSQ AIQEYQFLPK QTSDVYERAG  300
QSRFYDAPTE ASNSRISSLS TGSHFLHGAE QAPNYTCHGQ ISCSGHLTQH GRPPIFPMGS  360
TDYETTPSNI NVSSAPIEGQ FGIPQVAGFE NPLASSERID YHDEDVYRLD RKRKCNEEAK  420
IAKEVDAHEK QIRKEFEKQD VLNKKREEQM RREMERHDRE RKKEEERLMR EKQREEERFQ  480
REQSREHKRM EKFLQKQSIR FSGWYLESRF PLAEKLRQKE ELRKEKEAAR QKAANERATA  540
RRIARGYMEL MEDERLELME LVSRSKGLPS MLSLDSDTLQ QLDSFRGMMR QFPTEPVRLK  600
VPFSIKPWTS SEDNIGNLLM VWKFFITFAD ILGLPSFTLD EFVQSLHDYD SRLLGELHVA  660
LLKSIVKDIK DVARTPSVAS GVNQSSSANP GGGHPQIVEG AYAWGFNILN WQRHLNFLTW  720
PEILRQFGLS AGFGSQLKKR NAEDVYYHDD NEGHDGEDVI STLRNGSAAV NAAAKMKERG  780
YTNRRKSRHR LTPGTVKFAA FHVLSLEGSK GLSILEVAEK IQKSGLRDLT TSKTPEASIS  840
AALSRDTKLF ERTAPSTYCV KTPYRKDTAD SEAVLSAARE KIRVFQNTLS ECEEVEKDVD  900
DAERDEDSEC DHADDEPDGD EVDIEEKDVK APLVKAHDGG LPPAVGDINE ELNSVVNTLT  960
QPSTYCKCRE SDSLHTLDKS SAVSTSSDPP IGASSDYHEV ATDDAQDTEI DESNQGQSWV  1020
QGLAEGDYCD LSVEERLNAL IALIGVATEG NSIRAILEAD ADQENNVAES TPVHNLDNDG  1080
NASTVNNDFL VNQQSQLNAS NIVHERNGVS WELNANPESL SVQQYASSEK TRSQLKSYIG  1140
HKAEQLYVYR SLPLGQDRRR NRYWQFSTSA SPNDPGSGRI FFESRDGYWR LIDSAEIKVN  1200
CPYHYKVARW EGIRAFDALV ASLDTRGIRE SHLHSMLQSI ESTFKEAIGR KKCANREHSV  1260
GRILKNGSSE IRSPNHSNEF GSPCSTLSGA ASDNVMHSES FKIELGRNDV EKIAISKRAC  1320
MFVKWMWREC NNHRSTCAMK YGKKRCSELM QSCNYCYQIY LTEEMHCSSC HKTFKSIHSL  1380
SEHTSQCEEK QRTDPNWRMQ ISDNSIPIGL RLLKLLLATI EASVPAEALQ PFWTDGYRKS  1440
WSIKLYSTSS TEEVFQMLTA LEGAIKRDYL SFKFETTSEL LNSNTQDFAT QNPVARSGSA  1500
AVLPWVPDTT AAVALRLLDL DSAISYTFHQ KAGSNKEREA GDFMKPPSRY TAVTNKQEME  1560
PMGATGFDQH DGNWLTPGNG RRGRGRGGRG GSRGGRSRSR GGKVSRGIGS SPKIESYEKV  1620
PRKPARRGRN RGRGRGLRTV RPRQPSELGA RSIPKTNLLG SFSMLSNAKP TTTLDSPQSS  1680
GAEEWGLEIR AYAEDDDNNS VPQSDESEET GEPMNQDYDE LLPDYSRDNS GSSPLRMVDD  1740
GTEDNDEDDE EGEEDGEDYD AEHPIDEDSD DAEMGEDDEL PDDDDGGGVE NRDEDEGGTS  1800
YSSEYSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000298G0910

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020162194.1	0.0	homeobox-DDT domain protein RLT2-like
TrEMBL	A0A0E0A2S4	0.0	A0A0E0A2S4_9ORYZ; Uncharacterized protein
STRING	OGLUM05G27370.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator