PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000300G0590
Common NamePH01B019A14.17
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 185aa    MW: 21165.1 Da    PI: 9.7438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000300G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.31.2e-172267555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  PH01000300G0590 22 HNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 67
                     9*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-191574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.4821766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-212093IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-182071No hitNo description
PfamPF000105.6E-152267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-182372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEDGRAPRRP TPTRRSRSVE FHNFSERRRR DRINEKLKAL QELLPNCTKT DKVSMLDEAI  60
DYLKSLQIQL QMLVMGKGTA PVVPPELQQY MHYITSDPAR MLPLRPSEPP PFQITRATPQ  120
RQSNVESDFL SQMQNLHPSE PPQNFLRPPK LQLYTPEQRG GLASSSGHNG VWIAEGNSSY  180
HFME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12530ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000300G0590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962310.0FP096231.1 Phyllostachys edulis cDNA clone: bphyem110h10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684500.11e-111transcription factor PIF1
TrEMBLL0P3S71e-133L0P3S7_9POAL; PH01B019A14.17 protein
STRINGORUFI04G27110.11e-110(Oryza rufipogon)
STRINGSi011759m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-26phytochrome interacting factor 3-like 5