PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000302G0180

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 152aa MW: 16960.1 Da PI: 7.6134

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000302G0180	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.7	3.3e-15	28	86	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN +++ + ++ ++++e+ PH01000302G0180 28 RREKRRLSNRESARRSRLRKQQHLDELVQEVARLKAENAHVLARANDIAGQYVRVEQEN 86 79*************************************99999999988888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-16	24	88	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.714	26	89	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.1E-11	28	73	No hit	No description
SuperFamily	SSF57959	9.38E-11	28	82	No hit	No description
Pfam	PF00170	5.0E-12	28	86	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.05E-17	29	79	No hit	No description
PROSITE pattern	PS00036	0	31	46	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MSSSSLSPAG RLSGSDGDSG DIMAAGNRRE KRRLSNRESA RRSRLRKQQH LDELVQEVAR 60 LKAENAHVLA RANDIAGQYV RVEQENTVLR ARASELGDRL RSVNEVLRVV EEFSGVAMDI 120 QEECPPDDPL LRPWQIPYPG AAMPIAAHML QY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	46	RRSRLRK
2	40	47	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000302G0180

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094800	0.0	FP094800.1 Phyllostachys edulis cDNA clone: bphylf041c24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003579247.1	2e-89	ocs element-binding factor 1
Swissprot	P24068	1e-82	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	I1IHI8	4e-88	I1IHI8_BRADI; Uncharacterized protein
STRING	BRADI4G04720.1	6e-89	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	2e-34	basic region/leucine zipper motif 53

Publications ? help Back to Top
Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133]