PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000304G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 172aa    MW: 18633.9 Da    PI: 5.3093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000304G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18454155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr++k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  PH01000304G0340  4 CQYRGVRRRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 54
                     68*****998.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-12454IPR001471AP2/ERF domain
CDDcd000184.87E-31462No hitNo description
PROSITE profilePS5103223.709562IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-31562IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-22563IPR016177DNA-binding domain
SMARTSM003802.6E-36568IPR001471AP2/ERF domain
PRINTSPR003675.3E-10617IPR001471AP2/ERF domain
PRINTSPR003675.3E-102844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSSCQYRGVR RRKWGKWVSE IRQPGTKTRI WLGSFESAEM AAVAHDVAAL RLRGRDAQLN  60
FPGSVDLLPR PASSHPSDIR AAAAEAADRA RCEPALVARC GPEFGGAGSD SDRAVPSRVE  120
LGGSDEEFEV DSPRLWAEMA EAMLLDPPAW ATGAGEMEVA HCWSHGSLWD AC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-17566567ATERF1
3gcc_A7e-17566567ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000304G0340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0965690.0FP096569.1 Phyllostachys edulis cDNA clone: bphyem127p14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581277.12e-78ethylene-responsive transcription factor ERF027
TrEMBLA0A446ME012e-78A0A446ME01_TRITD; Uncharacterized protein
STRINGORUFI04G15010.13e-75(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-25ERF family protein