PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000306G0610
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 28989.6 Da    PI: 9.9617
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000306G0610genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-311059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rienk+nrqvtfskRrng+lKKA+E+SvLCdaeva+i+fs++gklyeyss
  PH01000306G0610 10 RIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSTKGKLYEYSS 59
                     8***********************************************96 PP
2K-box951.2e-31871731298
            K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++++++  e+ +Lk ++e Lq++qR+l Ge+L+ L++keLqqLeqqL++slk+iRs+Kn+ll+++i+elqkkek+l ++n +L+k l
  PH01000306G0610  87 KNQANWGDEYGRLKTKLEALQKSQRQLSGEQLDALTIKELQQLEQQLDSSLKRIRSRKNQLLFDSISELQKKEKSLTDQNGQLQKHL 173
                      6889********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-32286IPR002100Transcription factor, MADS-box
CDDcd002652.54E-42275No hitNo description
PRINTSPR004044.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2887172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.86389179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVALIVFST KGKLYEYSSQ  60
ASNMEGILDR YQRYSFEERA VLDPNIKNQA NWGDEYGRLK TKLEALQKSQ RQLSGEQLDA  120
LTIKELQQLE QQLDSSLKRI RSRKNQLLFD SISELQKKEK SLTDQNGQLQ KHLVETGKEK  180
ENNNALFNTH HREQPNGATT SSPSPTAVTV PDSMPTLNIG SYQSRGAGGE AEPQPSPAQV  240
NSGKLPPWML RCVNNNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-21175173MEF2 CHIMERA
6byy_B1e-21175173MEF2 CHIMERA
6byy_C1e-21175173MEF2 CHIMERA
6byy_D1e-21175173MEF2 CHIMERA
6bz1_A1e-21175173MEF2 CHIMERA
6bz1_B1e-21175173MEF2 CHIMERA
6bz1_C1e-21175173MEF2 CHIMERA
6bz1_D1e-21175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000306G0610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1012060.0FP101206.1 Phyllostachys edulis cDNA clone: bphyst016e22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958248.11e-146MADS-box transcription factor 18
SwissprotA2YNI21e-129MAD18_ORYSI; MADS-box transcription factor 18
SwissprotQ0D4T41e-129MAD18_ORYSJ; MADS-box transcription factor 18
TrEMBLB8Q5E11e-172B8Q5E1_9POAL; Flower development related protein
STRINGPavir.Ba00457.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-66MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Chen C, et al.
    Adapting rice anther culture to gene transformation and RNA interference.
    Sci. China, C, Life Sci., 2006. 49(5): p. 414-28
    [PMID:17172048]
  3. Yoshida H, et al.
    superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.
    Plant Biotechnol. J., 2007. 5(6): p. 835-46
    [PMID:17764519]
  4. Yao SG,Ohmori S,Kimizu M,Yoshida H
    Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
    Plant Cell Physiol., 2008. 49(5): p. 853-7
    [PMID:18378529]
  5. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  9. Lombardo F, et al.
    The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.
    Plant Biotechnol. J., 2017. 15(1): p. 97-106
    [PMID:27336225]