PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000308G0850

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

FAR1

Protein Properties

Length: 697aa MW: 77344.2 Da PI: 5.7778

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000308G0850	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.4	2.5e-28	74	164	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA++ GF++r+s+ ++s+r+++i++r+ vCskeg++e++ + +++++++ra+tr+gCka++++kk gkw+vtk++++HnH PH01000308G0850 74 DFYSTYARNSGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRACEglhADQKQQERAVTRVGCKAMIMIKKYAPGKWVVTKFVKDHNHG 164 6*****************************************99999999************************************5 PP
2	FAR1	88.8	7.9e-28	212	304	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + kk + k +r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+l PH01000308G0850 212 FYISYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRAKKemidEGKMKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHSLL 304 9****************************************999999989999*********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-26	74	164	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.5E-26	212	304	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MVVVMESTVI GTVSESKPDN EQKDSSTELP RAFTDMETSA AHGPAAEKLI GCEDDTELTP 60 YEGMEFESED AARDFYSTYA RNSGFRIRIS RYTRSRRDNS IISRRIVCSK EGFHETRACE 120 GLHADQKQQE RAVTRVGCKA MIMIKKYAPG KWVVTKFVKD HNHGPVPPRK LDARSAQEDC 180 DSMEKSQSIE VDCIEEPFEG MEFESEEAAK LFYISYARLN GFRARISRYC RSRRDNSIIS 240 RQIVCSKEGF REVRAKKEMI DEGKMKRPRM ITRVGCKAMI VVKKMNSGKW MVSKFEKEHN 300 HSLLSSKAVP STSNITSGEV ADFAAQSTDP NEVKVEGYSE GIQCSSTDSL TVLYNHLCQE 360 AIKFAKEGSV TEEIYHVAMS ALKEAAEKVA EVKKSHPTMP PRGFSIGESK HEVLQMKTMS 420 ASQCSNQVKQ KITPPQLKLF PEPTSNVALI PTDPLTDSTL SNCVDNVPLS RDFPINGGQV 480 RHGYEGSYLH AENNKEDSSQ KSQCTLMDRY LQLERCSDIC SFPWTADGPY KLLTAPIEAV 540 PISYRPAEPI RQPHRSFCNL GPLPGVLSEP NKRGNGPNPM LHATALACGA RVVPLEEAAS 600 LIKAIESKIR SGGATIAKLH SSNLAPLVPE AVSMSSSSED DEEDDHSEPL MLNVERNCHD 660 KSSEEMKLQG EPSELETEAE NCSAQPENEN LDPADC*

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MVVVMESTVI GTVSESKPDN EQKDSSTELP RAFTDMETSA AHGPAAEKLI GCEDDTELTP  60
YEGMEFESED AARDFYSTYA RNSGFRIRIS RYTRSRRDNS IISRRIVCSK EGFHETRACE  120
GLHADQKQQE RAVTRVGCKA MIMIKKYAPG KWVVTKFVKD HNHGPVPPRK LDARSAQEDC  180
DSMEKSQSIE VDCIEEPFEG MEFESEEAAK LFYISYARLN GFRARISRYC RSRRDNSIIS  240
RQIVCSKEGF REVRAKKEMI DEGKMKRPRM ITRVGCKAMI VVKKMNSGKW MVSKFEKEHN  300
HSLLSSKAVP STSNITSGEV ADFAAQSTDP NEVKVEGYSE GIQCSSTDSL TVLYNHLCQE  360
AIKFAKEGSV TEEIYHVAMS ALKEAAEKVA EVKKSHPTMP PRGFSIGESK HEVLQMKTMS  420
ASQCSNQVKQ KITPPQLKLF PEPTSNVALI PTDPLTDSTL SNCVDNVPLS RDFPINGGQV  480
RHGYEGSYLH AENNKEDSSQ KSQCTLMDRY LQLERCSDIC SFPWTADGPY KLLTAPIEAV  540
PISYRPAEPI RQPHRSFCNL GPLPGVLSEP NKRGNGPNPM LHATALACGA RVVPLEEAAS  600
LIKAIESKIR SGGATIAKLH SSNLAPLVPE AVSMSSSSED DEEDDHSEPL MLNVERNCHD  660
KSSEEMKLQG EPSELETEAE NCSAQPENEN LDPADC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000308G0850

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797822.1	0.0	uncharacterized protein LOC112877680
TrEMBL	A0A0A9FLW1	0.0	A0A0A9FLW1_ARUDO; Uncharacterized protein
STRING	OPUNC03G10640.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-23	FAR1-related sequence 5