PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000309G0470
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 173aa    MW: 19945.2 Da    PI: 7.6289
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000309G0470genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.1e-091359145
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     r++W++eEd+ +  a  + + +   +W+++a+ ++ gRt+ +  +++q
  PH01000309G0470 13 RLPWSKEEDKVFESALVLCPEHapdRWALVAAQLP-GRTPQEAWEHYQ 59
                     89******************99*************.****98777777 PP
2Myb_DNA-binding43.57.3e-14106150347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++++ +++G g+W+ I+r     Rt+ q+ s+ qky
  PH01000309G0470 106 PWSEEEHRLFLEGLEKYGRGDWRNISRFSVRSRTPTQVASHAQKY 150
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.394866IPR017930Myb domain
SuperFamilySSF466891.59E-111061IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-71161IPR009057Homeodomain-like
SMARTSM007178.5E-51264IPR001005SANT/Myb domain
PfamPF002494.4E-71359IPR001005SANT/Myb domain
CDDcd001671.10E-51553No hitNo description
PROSITE profilePS5129418.35199155IPR017930Myb domain
SuperFamilySSF466891.31E-17101156IPR009057Homeodomain-like
SMARTSM007175.1E-11103153IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.0E-17104154IPR006447Myb domain, plants
PfamPF002493.2E-11106150IPR001005SANT/Myb domain
CDDcd001675.82E-11106151No hitNo description
Gene3DG3DSA:1.10.10.602.3E-11106149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDFYRAAGRP VTRLPWSKEE DKVFESALVL CPEHAPDRWA LVAAQLPGRT PQEAWEHYQA  60
LVADVDLIER GAVDFPGCWD EDDNKDGAPD RRAGKSRGEE RRRGIPWSEE EHRLFLEGLE  120
KYGRGDWRNI SRFSVRSRTP TQVASHAQKY FIRQTNAATR DSKRKSIHDI TTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-16177172RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000309G0470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0968780.0FP096878.1 Phyllostachys edulis cDNA clone: bphyem104c18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567296.15e-95transcription factor DIVARICATA
SwissprotQ8S9H78e-46DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1D8F0J81e-124A0A1D8F0J8_9POAL; MYB protein
STRINGEMT139742e-87(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-50MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]