PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000309G0940
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 984aa    MW: 105998 Da    PI: 6.3187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000309G0940genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000427457821355
                      HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  PH01000309G0940 745 RQMIQDRIKELREIVPNS-----AKCSIDALLEKTINHMLFLQ 782
                      77899************6.....5999999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.7E-297177IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142156.4E-11185224IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.728732781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00366745782No hitNo description
Gene3DG3DSA:4.10.280.103.3E-4745785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 984 aa     Download sequence    Send to blast
MAGATPLRDS LRRLCADVGW SYAVFWRATR ATDPQPLQLV WGDGHWERAV GAPAISGFEA  60
MDLLLKEKAA ALRSGGGRGG EGHAPEGAAG HAHDRVDALV HKAMVRQVHV VGEGVIGQAA  120
LTGAHRWILH DSLDECGEAD EVLLEMKDQF CAGIQTVAVI PVLPQGVIQL GSTKMVLLEM  180
KDQFCAGIQT VAVIPVLPQG VIQLGSTKMV MEEAALIDHV RSLFGQLGSS SAVVPHGSFL  240
QDPIMKTLVH NSLGVPTSSH LGDLPGSVNA SSPNDDRINH HFWHLMTPAS MIQSFHPVQQ  300
LYAGTTFCRP VTLASRCDFF QPLVQSDHGS TFLLNSQSEG NKTTVPLKNN VSYSATSLDA  360
FPHASSSLEE PNITISGRRK CLSIEQHGSC LKGGMEITKS DAAASNCAGE THILNKMDAL  420
TSQDHSIDFQ TSNATSVNKK FQTMSIADNT KHEGDSFAGS DAPFFDSARY SNCFQSLLGT  480
LQGSVSSNSN AIHGETSHNV ISGENNFCSL EGRNTASSSD LPEVLASPIP LQLTGGNDLF  540
DVLQLQQKPR GLNDSEVNNP ESMSCGLEQA VKSLIGDTND DFTGLIAEAD PDQLLDAIVS  600
KMSTGRKQNL DASVSCSTSV ASVDNISFHS SCHPYTTGSS SGQLFCNLPG VSSISIKAEI  660
PAASFGQSSY SIDTFEGCSQ RQQGCKSQIR LWVENSQNVA SDSLSAGQPS DGLSDGQCKR  720
VDGIGKSNRK RPRPGENPRP RPKDRQMIQD RIKELREIVP NSAKCSIDAL LEKTINHMLF  780
LQSVAKHADK LKESGEPKII SQEGGLLLKD NFEGGATWAF EVGTQSMTCP IIVEDLSPPR  840
QMLVEMLCKE RGIFLEIADQ IRGLGLTIFK GVMEVRKDKI WARFAVEVLR TLACHAVVSI  900
HRQFQPQVSL TACDTDAPPY FSKWSALTMD AAVRLVGSVI MLRLPNYCTG ALGLCVSGCV  960
FAVRRFFHVQ QVPTKCLSIL TEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1729733KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000309G0940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619837.10.0transcription factor LHW isoform X4
TrEMBLA0A0E0JRF30.0A0A0E0JRF3_ORYPU; Uncharacterized protein
STRINGOPUNC01G37140.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161891314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.37e-38conserved peptide upstream open reading frame 7