PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000309G1270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 194aa    MW: 21287.3 Da    PI: 5.5379
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000309G1270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.78e-16111172363
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklksev 63 
                      + +r++r++kNRe+A rsR+RK+a+i+eLe  v +Le+eN +L +++ e+++k  ++lk +v
  PH01000309G1270 111 AMQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEENAQLlREQEEQIQKRLKELKEKV 172
                      689*************************************9972566678888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-10109174IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.105111175IPR004827Basic-leucine zipper domain
PfamPF001704.2E-15111172IPR004827Basic-leucine zipper domain
CDDcd147072.05E-19113160No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-14114172No hitNo description
SuperFamilySSF579592.56E-11114160No hitNo description
PROSITE patternPS000360116131IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSPSPAPEIA AAPRTVDEVW KEITGGGPSR VAPAAPAVVV ADAGTGAPEM TLEDFLARES  60
AVKEDEVRIF GPPAPAEGQV VMGFLDGAEG VGGVGGRGRK RQLMDPMDRA AMQRQKRMIK  120
NRESAARSRE RKQAYIAELE SLVTQLEEEN AQLLREQEEQ IQKRLKELKE KVTPVIIRKM  180
PSQDLRRTNS MEW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000309G1270
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612904.14e-82bZIP transcription factor 12-like
SwissprotQ0JHF13e-83BZP12_ORYSJ; bZIP transcription factor 12
TrEMBLA0A0D9YHX39e-82A0A0D9YHX3_9ORYZ; Uncharacterized protein
TrEMBLQ9M4Y58e-82Q9M4Y5_ORYSA; OSE2
STRINGOGLUM01G42750.12e-82(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26653786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.18e-32G-box binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]