PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000312G0600
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 578aa    MW: 62669.4 Da    PI: 6.5128
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000312G0600genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61.1e-083493861954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  PH01000312G0600 349 FEHflQPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 386
                      664459******************************88 PP
2BELL111.35.5e-36211282172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+akpYt lAl++iSrhFr+L+dai  q+
  PH01000312G0600 211 ERQDLQNKVTALVAILDQVDRRYRHYHHQMQIVMSSFDAVAGAGAAKPYTVLALQTISRHFRSLRDAIGAQV 282
                      799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-47140280IPR006563POX domain
PfamPF075268.6E-48143278IPR006563POX domain
PROSITE profilePS5007111.985327390IPR001356Homeobox domain
CDDcd000866.26E-12330391No hitNo description
SMARTSM003891.9E-9330394IPR001356Homeobox domain
SuperFamilySSF466897.7E-17331397IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-27333396IPR009057Homeodomain-like
PfamPF059202.2E-16347386IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MATFFSTSTN LTAAGDMSFH HYPPSSNPYP DSSTGGLIPL PAIIASQSRI AHGDCRDEPT  60
AFMSTRERPT DSAEIGLQTH LLMANGHANA STTQHHQGLS LSLGTQVPVS LYQYRPSGMA  120
AASLLSPSQS TMASRNAQTN VYVQNSRYLK AARELLDEVV NVRDATKRKG DKNQGKDSGE  180
CKVDTDKSED KAGSIQQEHE GNSSAELSPS ERQDLQNKVT ALVAILDQVD RRYRHYHHQM  240
QIVMSSFDAV AGAGAAKPYT VLALQTISRH FRSLRDAIGA QVQSARRSLG EQDTSAQGGG  300
FSRLRYIDQQ LRQQRAMQQF GMMQQPQHAW RPQRGLPESA VSVLRAWLFE HFLQPYPKDS  360
EKLMLARQTG LSRGQVSNWF INARVRLWKP MIEEMYKEEF GGEMDSNSSS ENAGKGKDEA  420
VSTEDRNEFQ SPSSAAKNAG ASQLNPFKSE AMASMDSGGV GLSSLDVGAM GAYATSLNLN  480
HHGPGGGRGS SSLLQDALAH HGGDARFVAY GDMADLGGYD GGSVSLTLGL QHCNNAGPVP  540
AEQQDLLYGS ADDFEFMNGS DDRQRFGSSQ LLHDFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-16336393158Homeobox protein Meis1
4xrs_B6e-16336393158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000312G0600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680340.0AK068034.1 Oryza sativa Japonica Group cDNA clone:J013131E13, full insert sequence.
GenBankAK0998290.0AK099829.1 Oryza sativa Japonica Group cDNA clone:J013104D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649449.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_015691112.10.0PREDICTED: BEL1-like homeodomain protein 7
SwissprotQ9SIW11e-123BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A0E0K9740.0A0A0E0K974_ORYPU; Uncharacterized protein
STRINGOPUNC03G04600.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-109BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]