PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000314G0470
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 382aa    MW: 40116.6 Da    PI: 4.7264
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000314G0470genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35291192101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++++isw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll+
  PH01000314G0470  29 FLTKTYQLVDDPAVDDVISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLR 113
                      9*****************************************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  PH01000314G0470 114 DIHRRK 119
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.5E-3819112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5825118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.59E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAEQGAAAGE PLALAEAEAA GQRSLPTPFL TKTYQLVDDP AVDDVISWNE DGSTFIVWRP  60
AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA NDCFRRGEKR LLRDIHRRKV  120
VPPPAPSPGL ATAAAAAASG AVTVAAAPIP MALPVTRPGS PAHSAEEQVL SSNSGSGEEH  180
LTAPSGSGSG LGGGGGGSAS GDLSEENSRL RRENSRLTRE LGQMKKLCNN ILLLMSKYSA  240
TQQPDANAAL SSVANCSGES SEALTPLPSL PPAILDLMPS CSALATAAVV AGLDVDGEPD  300
TSARLFGVSI GLKRTRDDGD DAGAGAAADE DPADDHGAEV KPEPADPRAD SKEQSPDQHL  360
WPIFRPTPVY RACNGPDRAG SD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-271911820129Heat shock factor protein 1
5d5v_B5e-271911820129Heat shock factor protein 1
5d5v_D5e-271911820129Heat shock factor protein 1
5hdg_A4e-272911810110Heat shock factor protein 1
5hdn_A4e-272911810110Heat shock factor protein 1
5hdn_B4e-272911810110Heat shock factor protein 1
5hdn_C4e-272911810110Heat shock factor protein 1
5hdn_D4e-272911810110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000314G0470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0986290.0FP098629.1 Phyllostachys edulis cDNA clone: bphylf056i09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578478.11e-164heat stress transcription factor B-2c
RefseqXP_025876145.11e-164heat stress transcription factor B-2c isoform X1
RefseqXP_025876147.11e-164heat stress transcription factor B-2c isoform X5
SwissprotQ652B01e-162HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A0E0B5K11e-164A0A0E0B5K1_9ORYZ; Uncharacterized protein
STRINGBRADI4G35780.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-60HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]