PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000317G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24088.5 Da    PI: 9.0633
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000317G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien++nrqvtfskRrngilKKA E+SvLCdaev  +ifss gkly+y+s
  PH01000317G0080  9 KRIENSTNRQVTFSKRRNGILKKAREISVLCDAEVGAVIFSSGGKLYDYCS 59
                     79***********************************************96 PP
2K-box72.99.4e-2571167197
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                      yq++sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL  +e++Le++l++  +k ++++ + +++ ++ e+e++    +L
  PH01000317G0080  71 YQTNSGKILWDEKHKSLSSEIDRIKKENDNMQIELRHLKGEDLNSLQPKELITIEKALENGLTNLNEKLMDHWERLVRNGKMLEDENKLLAFKL 164
                      89999999********************************************************************************999999 PP

            K-box  95 rkk 97 
                      +++
  PH01000317G0080 165 HQQ 167
                      997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.702161IPR002100Transcription factor, MADS-box
CDDcd002658.44E-44280No hitNo description
SuperFamilySSF554552.49E-34296IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.9E-1682164IPR002487Transcription factor, K-box
PROSITE profilePS5129712.63784170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGILK KAREISVLCD AEVGAVIFSS GGKLYDYCSP  60
KTSLSRILEK YQTNSGKILW DEKHKSLSSE IDRIKKENDN MQIELRHLKG EDLNSLQPKE  120
LITIEKALEN GLTNLNEKLM DHWERLVRNG KMLEDENKLL AFKLHQQDVA LSGSMRDLEL  180
GYHPDRDFAA QMPITFRVQP SHPNLQENN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-19186178Myocyte-specific enhancer factor 2B
1tqe_Q3e-19186178Myocyte-specific enhancer factor 2B
1tqe_R3e-19186178Myocyte-specific enhancer factor 2B
1tqe_S3e-19186178Myocyte-specific enhancer factor 2B
5f28_A4e-19186178MEF2C
5f28_B4e-19186178MEF2C
5f28_C4e-19186178MEF2C
5f28_D4e-19186178MEF2C
6bz1_A4e-19191183MEF2 CHIMERA
6bz1_B4e-19191183MEF2 CHIMERA
6bz1_C4e-19191183MEF2 CHIMERA
6bz1_D4e-19191183MEF2 CHIMERA
6c9l_A3e-19186178Myocyte-specific enhancer factor 2B
6c9l_B3e-19186178Myocyte-specific enhancer factor 2B
6c9l_C3e-19186178Myocyte-specific enhancer factor 2B
6c9l_D3e-19186178Myocyte-specific enhancer factor 2B
6c9l_E3e-19186178Myocyte-specific enhancer factor 2B
6c9l_F3e-19186178Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000317G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0992100.0FP099210.1 Phyllostachys edulis cDNA clone: bphyem127e18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645133.11e-145PREDICTED: MADS-box transcription factor 2
SwissprotQ407021e-145MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLA0A3Q8BIA91e-150A0A3Q8BIA9_BAMOL; MADS2
STRINGOB01G48280.11e-144(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]