PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000320G0780
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 282aa    MW: 30300.3 Da    PI: 6.6166
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000320G0780genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601002.3e-314106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q
  PH01000320G0780   4 SCNGCRVLRKGCSDNCAIRPCLqwirgPDAQANATVFLAKFYGRAGLINLITAGPDHVRPAIFRSLLYEACGRMLNPVYGSVGMLWSGNWQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallk 98 
                      +++e +l++
  PH01000320G0780  98 AAVESVLRG 106
                      **9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.5E-901269IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.5493109IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-254102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRG PDAQANATVF LAKFYGRAGL INLITAGPDH  60
VRPAIFRSLL YEACGRMLNP VYGSVGMLWS GNWQLCQAAV ESVLRGMPIA QPPPAATDVP  120
PLRTCDIRHV AKRGDYGGVS VDLQRVGNSS RAQFKRPSAH RSVGSESALE LVFAEPSAAM  180
VDIRQAQPLN WARRELSHES ESHDAVPESD RSNASVDTVE GSHVSQSEAP EPRATEVSEA  240
GLELTLGLLP PLHKTEPADD GQADKGEPVE LSLTISASIV R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000320G0780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005020.0FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643695.11e-145PREDICTED: LOB domain-containing protein 40
TrEMBLJ3KW271e-144J3KW27_ORYBR; Uncharacterized protein
STRINGOB01G11830.11e-145(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-73LOB domain-containing protein 41