PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000323G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 350aa    MW: 37692.6 Da    PI: 7.3266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000323G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.5e-10169217355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  PH01000323G0020 169 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 217
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17163235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-10164221No hitNo description
PROSITE profilePS5088815.65166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16168234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-7169217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MERILIGFNT NLPLCLYIDL HSSHRLIAIR VKIVLNLTKR AARSSSCFGG GNGTVSAGAF  60
NAAESISPDS GHHDDAPRAE AAAGDCSDSK NMRRSYEVIG MGQAKATNVS TDFVNETERS  120
KGAKGEENGP TAAATAAAGK SKGEGAKEAD EPQKEGYIHV RARKGQATNS HSLAERLRRE  180
KISERMKLLQ DLVPGCSKVT GKAVMLDEII NYVQSLQSQV EFLSMKLATV NPRLDFNLES  240
LLSKDLLRFP GAPSSTSIGF SFSPEMMPKL QLSQSGMLQG GVHGMANPDV FRTVMQGQLN  300
EKDAFREPAS QQVPHTMDGT LHDAVQMAYL SVIGSQDLSI RPDQDGFHM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000323G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821587.11e-122transcription factor bHLH49-like
TrEMBLA0A3L6PPS31e-122A0A3L6PPS3_PANMI; Transcription factor bHLH49-like isoform X2
STRINGPavir.Fb01828.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-55bHLH family protein