PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000323G0330

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Dof

Protein Properties

Length: 246aa MW: 26213.2 Da PI: 6.5049

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000323G0330	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.7	1.1e-37	53	110	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fCk CrryWtkGG+lrnvPvGgg+rk+ +ss PH01000323G0330 53 GEPCPRCESRDTKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKKSSSS 110 678**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	50	105	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.351	54	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-31	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MQEQPLHAAE PGRRPAQQFA GVDLRRPKGY AAPSPPPVAT AAPAPAAKAV GEGEPCPRCE 60 SRDTKFCYYN NYNTSQPRHF CKCCRRYWTK GGTLRNVPVG GGTRKKSSSS SCSSPSSSSG 120 TAAKPQKPSK KRRAAPPDPT TSVDVVTAPD STKTTETTTT PPTDAASEIT TELVVPAMEE 180 DSFTDLLQPD YDVAVALGLD FSDYPAGRKA LLDPDSFEWP PAFDLGAYWS GAGFADPDPG 240 VFLNLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000323G0330

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096612	0.0	FP096612.1 Phyllostachys edulis cDNA clone: bphyem122f05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696049.1	2e-90	PREDICTED: LOW QUALITY PROTEIN: dof zinc finger protein MNB1A-like
Swissprot	P38564	1e-68	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A0D9X963	2e-89	A0A0D9X963_9ORYZ; Uncharacterized protein
STRING	LPERR08G15690.1	3e-90	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-28	DOF zinc finger protein 1

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]