PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000326G0720
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 526aa    MW: 54931 Da    PI: 10.0062
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000326G0720genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.31.8e-19199235237
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+
  PH01000326G0720 199 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQ 235
                      7***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-20183235IPR003657WRKY domain
SuperFamilySSF1182903.66E-17191235IPR003657WRKY domain
PROSITE profilePS5081119.738193324IPR003657WRKY domain
SMARTSM007745.1E-19198323IPR003657WRKY domain
PfamPF031063.6E-16200235IPR003657WRKY domain
PfamPF056646.9E-9235306IPR008528Protein of unknown function DUF810
Gene3DG3DSA:2.20.25.806.5E-6300324IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MPLPDGRTGV VHGGRDDVNM EAVSAVEAEL RRVVEDNRRL RGMLEELNRS YGALYHQLLQ  60
VTQQQHHPHR HPDLVMGNRS PLTQTHLTAG APNPSTTTQQ LLQPRASSTA QQADADVASD  120
TGVDDEAGAG TGDASPSLSN AGNEADGRSA GPFGGGKRRM GQDETTPGRE SGEQASSEQL  180
PCRKPRVSVR ARSEAPMISD GCQWRKYGQK MAKGNPCPRA YYRCTMAIGC PVRKQRLLMS  240
TVASKMKKAL RLRSLESSKG GRAAQRRLAT AAELVLLHLR VMEQADTRIW RGLLRIAAGQ  300
VQRCAEDKTV LITTYEGNHN HQLPPAATTM ANTTSAAAAM LLSGPATSRD GAFLGHPAAL  360
FHQSLPYAST MATLSASAPF PTITLDLTQA PAGATGGASG LLHALHRPPA IHPAAAPAMP  420
FAVPPQLAMY LPQRASAVLP AGLQGARQQS VMETVTAAIT ADPNFTTALA AAISSVMAGG  480
AHHQAQPTPR GSVGVAGDGN DGTGAVSASV APTAGAHGTA PRRSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000326G0720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432751e-83AK243275.1 Oryza sativa Japonica Group cDNA, clone: J100050A06, full insert sequence.
GenBankAP0024801e-83AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149571e-83AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313677.11e-153WRKY transcription factor 42 isoform X2
TrEMBLA0A1D8F0J20.0A0A1D8F0J2_9POAL; WRKY9 protein
STRINGSb03g011800.11e-151(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.12e-33WRKY family protein