PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000329G0590
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 244aa    MW: 27669.8 Da    PI: 6.5003
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000329G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.12.4e-08211518127
              NAM   8 hPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpk.........kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                       Ptd +l+ e L++  ++   e  +  + v  ++ +++ w+Lp+           ++ee+ e yf +    ++++  r+    +++yW      
  PH01000329G0590  21 TPTDFQLLEENLRPYRQRYMSEWMKLPRGVnnGLPDMDRWELPActcrdaagqG-SGEEEgEKYFLTDCIYRSSSAPRQGFWQQRSYWDLGRGI 113
                      599999999999988888776666666666436899999***965777765422.22333488**99999998888888888889999954443 PP

              NAM  90 kevlskkgelvglkktLvfykgrapk.gektdWvmheyr 127
                      ++  +  ++  g+k+t  f++g+ ++ g+kt+Wvm+ y 
  PH01000329G0590 114 RDESN-LSRFAGIKRTYDFHTGDPSRgGTKTNWVMNVYF 151
                      44333.5778**********996655279******9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.55514170IPR003441NAC domain
PfamPF023659.1E-720150IPR003441NAC domain
SuperFamilySSF1019411.83E-921164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MNALQLFEES LREGFPDLST TPTDFQLLEE NLRPYRQRYM SEWMKLPRGV NNGLPDMDRW  60
ELPACTCRDA AGQGSGEEEG EKYFLTDCIY RSSSAPRQGF WQQRSYWDLG RGIRDESNLS  120
RFAGIKRTYD FHTGDPSRGG TKTNWVMNVY FLIGQIAISR KTWFCAVYSR TTHPIDYDPR  180
PKCAAFHQPP NGEGSLSSTY TFFDPCSCQH SGKPCNHAIH GPSSSSSLST YAVSDQTLPP  240
ELTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000329G0590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954960.0FP095496.1 Phyllostachys edulis cDNA clone: bphyst021g07, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1859089