PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000333G0590
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 144aa    MW: 15660.5 Da    PI: 7.4257
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000333G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-12104127427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      + C f++ t tCkyGd CkF H++
  PH01000333G0590 104 KDCAFYMMTRTCKYGDACKFDHPQ 127
                      68********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.366100128IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6101127IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9104127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5106126IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSNPYYAYGR GGVGDDAAAG YSSYEIDLIV ARYAGDSLPY PSAAGAFDAQ VSARRSAEVL  60
YHQSIMGSHS TVGQSEALYS SNTMVKRPRL ESSLPIYPQR PGAKDCAFYM MTRTCKYGDA  120
CKFDHPQWVP EGGIPNWKEV RIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000333G0590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1121164e-99AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200959.12e-75zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ64e-60C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A453F1Z02e-76A0A453F1Z0_AEGTS; Uncharacterized protein
TrEMBLA0A453F2632e-76A0A453F263_AEGTS; Uncharacterized protein
STRINGMLOC_17446.16e-70(Hordeum vulgare)
STRINGSb03g027910.13e-66(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.14e-38floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]