PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000338G0120

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MIKC_MADS

Protein Properties

Length: 226aa MW: 26275.2 Da PI: 9.3221

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000338G0120	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.1	4.7e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskRr+g+lKKA+ELS+LCda++ viifs +g++yeyss PH01000338G0120 9 KKIENPTNRQVTFSKRRTGLLKKANELSILCDAQIGVIIFSGSGRMYEYSS 59 68***********************************************96 PP
2	K-box	48.5	3.9e-17	85	146	14	75
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 +++ +e++++k+e++ L+ R+++GedL sL+l++ +Leqq+e sl k+R +K+ + e PH01000338G0120 85 QQKIIHEMTRMKDENNRLRIIMRQYMGEDLASLTLQDVINLEQQIEFSLYKVRLRKDMRISE 146 678889**************************************************876654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.1E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.875	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.68E-39	2	76	No hit	No description
SuperFamily	SSF55455	8.63E-31	2	79	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-29	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	6.0E-14	81	147	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	11.223	85	167	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008360	Biological Process	regulation of cell shape
GO:0048316	Biological Process	seed development
GO:0048481	Biological Process	plant ovule development
GO:0080155	Biological Process	regulation of double fertilization forming a zygote and endosperm
GO:2000029	Biological Process	regulation of proanthocyanidin biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGRGKVELKK IENPTNRQVT FSKRRTGLLK KANELSILCD AQIGVIIFSG SGRMYEYSSP 60 PWRIANIFDR YLKAPSTRFE EMDIQQKIIH EMTRMKDENN RLRIIMRQYM GEDLASLTLQ 120 DVINLEQQIE FSLYKVRLRK DMRISENQSS HLCHMSLARE QSLATETINP KTFPFWDVGS 180 QLYGHDAESS MTALQLSPQL HEFKLQPLQP NLQEANLHGY VLRLW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	6e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_Q	6e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_R	6e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_S	6e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6byy_A	6e-17	1	60	1	60	MEF2 CHIMERA
6byy_B	6e-17	1	60	1	60	MEF2 CHIMERA
6byy_C	6e-17	1	60	1	60	MEF2 CHIMERA
6byy_D	6e-17	1	60	1	60	MEF2 CHIMERA
6bz1_A	7e-17	1	60	1	60	MEF2 CHIMERA
6bz1_B	7e-17	1	60	1	60	MEF2 CHIMERA
6bz1_C	7e-17	1	60	1	60	MEF2 CHIMERA
6bz1_D	7e-17	1	60	1	60	MEF2 CHIMERA
6c9l_A	6e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_B	6e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_C	6e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_D	6e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_E	6e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_F	6e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000338G0120

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY177698	1e-152	AY177698.1 Oryza sativa (japonica cultivar-group) transcription factor MADS31 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015691696.1	1e-140	PREDICTED: MADS-box transcription factor 31-like isoform X2
Swissprot	Q84NC2	3e-93	MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBL	A0A3Q8BN01	1e-146	A0A3Q8BN01_BAMML; MADS31
STRING	OB04G32080.1	1e-140	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1850	37	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.3	2e-42	MIKC_MADS family protein

Publications ? help Back to Top
Schilling S, et al. Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa). Plant J., 2015. 84(6): p. 1059-72 [PMID:26473514]