PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000338G1040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 219aa    MW: 25276.9 Da    PI: 9.6016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000338G1040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.97.6e-185096455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  PH01000338G1040 50 FHNFSERRRRDRINEKLKALKELLPNC-----TKTDKVSMLDEAIDYLKSLQ 96
                     59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-1944103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5524695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-1649100No hitNo description
SuperFamilySSF474593.27E-2149122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-155196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-1952101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MMQKLIEIRC HKYYRELKEG EQEQVPQELM EDGRAPRRST PIRRSRSAEF HNFSERRRRD  60
RINEKLKALK ELLPNCTKTD KVSMLDEAID YLKSLQVQLQ MLVMGKGMAP VVPPELQQYM  120
HYITADPAQL LPLRPSEPRP FQITHATPQR QSNVESDFLS QMQNLHPSEP HQNFLRPPKL  180
QLYTPKEIRA IRIHSSADQQ AIAGDSKDTS TSASHNSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000338G1040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962310.0FP096231.1 Phyllostachys edulis cDNA clone: bphyem110h10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684500.11e-97transcription factor PIF1
TrEMBLA0A1D6DZ901e-102A0A1D6DZ90_MAIZE; Protein SPATULA
STRINGORUFI04G27110.19e-98(Oryza rufipogon)
STRINGONIVA04G24530.18e-98(Oryza nivara)
STRINGOBART04G25920.17e-98(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-25phytochrome interacting factor 3-like 5