PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000340G1000
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HB-other
Protein Properties Length: 669aa    MW: 75955.1 Da    PI: 8.7481
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000340G1000genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.81.9e-13149201557
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      t+ ++ q+e Le+++ + +yp+ e++ e A+++gL  +qV++WF+ rR ke++
  PH01000340G1000 149 TKKSPLQIEMLETFYSEVQYPKPEDMVEYATSVGLAYSQVRIWFKERRRKERR 201
                      566899*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-13142202IPR009057Homeodomain-like
PROSITE profilePS5007114.447142202IPR001356Homeobox domain
SMARTSM003891.0E-12144206IPR001356Homeobox domain
SuperFamilySSF466892.65E-12145205IPR009057Homeodomain-like
PfamPF000468.8E-11149201IPR001356Homeobox domain
CDDcd000862.58E-7149192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MGGWVVTRSV ASWMVGGGSL FFLAPKTFFI GMEWNGIESA GRGTRDVGFC EQKSGEEEEF  60
NGVFAWRVGL GWGELNWEGK EGNKTKRKLC LSLSLSVYSG GLWLFGWKWA QWVVAVWLEM  120
GSTRKCEMGW FGLDRMISGL EAKRENAGTK KSPLQIEMLE TFYSEVQYPK PEDMVEYATS  180
VGLAYSQVRI WFKERRRKER REMEAIGAHM ERQLSARSNG VKCSSSSRFS SFSQGPMYNT  240
VGLHPEDVSS VDRSMSFVGE KHTLRSQVLF PKDYILRKVF RKDGPPLGSE FDHLPQSTHG  300
YLRDTTGYHS YHNQRVVKKR KIMGSTTQRS TLPCEDSGPV RKHGIGKGLM TVWHAMFSCN  360
DHIQTRSNFI DETGCLRSFR PFDDCDRLED HDDGKLIQKQ IVARKKMDKR SRPPPNKRKV  420
PRSRVIAPKE HPPVECHLSV DESESSELQT ELPTLVDDEE LELSELQAGP NPLRCSAHLS  480
SSGRHGCPLC KDLLARFPPP SVKMKQPFSK RPWDSSPAIV KKLFQVVRFV YTHLGSMDVH  540
PVTFDEFAQA FNDKVFFYKS KFPGIGMIPG IIFSWCKCDS QDSLLGQVHV GLLKLLLLNT  600
ERGSGGVFVP RSSKDCRFLT FLNFFEYDAA AESSSSLVLV LRAELFVEPF HHHVIFIAML  660
LFWSFLEI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194201RRRKERRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000340G1000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646956.10.0homeobox-DDT domain protein RLT3 isoform X1
TrEMBLB8B8L70.0B8B8L7_ORYSI; Uncharacterized protein
STRINGOB07G27970.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.16e-56Homeodomain-like transcriptional regulator