PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000348G0740
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 566aa    MW: 61080.4 Da    PI: 8.1346
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000348G0740genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-103413781954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  PH01000348G0740 341 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 378
                      554459******************************88 PP
2BELL93.52e-30209277472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e q +k++L+sl+e V+krYkqy++qlq vissFe+vagl +a+p++s+Al+++S+hF+ Lk +i +q+
  PH01000348G0740 209 EQQWRKTRLISLMEDVCKRYKQYYQQLQDVISSFETVAGLSNAAPFASMALRTMSKHFKYLKSMILSQL 277
                      7899**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-33137275IPR006563POX domain
PfamPF075262.7E-36142273IPR006563POX domain
PROSITE profilePS5007112.455319382IPR001356Homeobox domain
CDDcd000867.27E-14322383No hitNo description
SMARTSM003891.4E-11322386IPR001356Homeobox domain
SuperFamilySSF466894.23E-17324389IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-29325386IPR009057Homeodomain-like
PfamPF059204.9E-19339378IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MSSAAGGYGG GAEQQHHLLL GQAAGQLYHV PQHSRREKLR FPPDHADSWP PPGSWPPPPA  60
PFYSYASSSS SYSPHTPTLA HAHAQLVAHG LPGGAQIPSQ NFALSLSSAS SNPPPPPRRQ  120
LGGDGGGGST GPYGPFTGYA AVLGRSRFLG PAQKLLEEIC DVGGRPAQVD RASDDGLLDM  180
EAMAAGDVDH EMDGSDRAAA EAVTVCGAEQ QWRKTRLISL MEDVCKRYKQ YYQQLQDVIS  240
SFETVAGLSN AAPFASMALR TMSKHFKYLK SMILSQLRNT SKVAAKDGLG KEDMANFGFL  300
GGGAALLRGN NVNSFRQPHN IWRPQRGLPE RAVSVLRAWL FEHFLHPYPT DSDKQMLAKQ  360
TGLTRNQVSN WFINARVRLW KPMVEEIHNL EMRQLQKNSS LDKNQLGMQQ TQHSSDSSGK  420
PSHPSNSHQG QSSSMTRDHI TPASSRHIQN ELPHMPHDIP GQVSFAYNGL AANHSIALSH  480
PQQVEGVGVG VCGAANGGGV SLTLGLHQNN RAYIAEPLPS ALPLNLAHRF GLEDVSDAYV  540
IGSFGGQDRH FTKEIGGHLL HDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A5e-17328386563Homeobox protein Meis2
4xrm_B5e-17328386563Homeobox protein Meis2
4xrs_A4e-17328385158Homeobox protein Meis1
4xrs_B4e-17328385158Homeobox protein Meis1
5bng_A4e-17328386159Homeobox protein Meis2
5bng_B4e-17328386159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000348G0740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654500.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLJ3M7T00.0J3M7T0_ORYBR; Uncharacterized protein
STRINGOB05G26540.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.17e-66TALE family protein