PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000353G0680
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 223aa    MW: 23321.9 Da    PI: 5.9997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000353G0680genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000217395123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C + F ++  L  H++ H
  PH01000353G0680 73 FTCNYCQRKFFSSQALGGHQNAH 95
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-670100No hitNo description
PROSITE profilePS5015711.32373100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKSNALCQEP CEELSDISSQ AVSNNEPSNS SSSPVSLDLS LTVAATTESS TTDSNGGGGG  60
MQATAAREPT RVFTCNYCQR KFFSSQALGG HQNAHRRERT LARRAQRLDA FPYGYADVAS  120
LPLYGSSLYP IGIQAHASVH HPGVAPADVA ARPELRPARG LLGPMPFFVG DEEVSFGWTG  180
VFRPAGVVPA APAGSSAAVN SVSNFGGSVV VQAVEEPDLT LRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000353G0680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962280.0FP096228.1 Phyllostachys edulis cDNA clone: bphyst038a06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985058.13e-84zinc finger protein 4
RefseqXP_022685589.13e-84zinc finger protein 4
TrEMBLA0A0A9EIN45e-94A0A0A9EIN4_ARUDO; Uncharacterized protein
STRINGSi038797m1e-83(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-16zinc finger protein 4